W: bioperl source: binary-arch-rules-but-pkg-is-arch-indep W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_make_mrna_protein.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2BSML.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2gff.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2tribe.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_taxid4species.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::EUtilities::ElinkData.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Expression::FeatureGroup::FeatureGroupMas50.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Expression::FeatureSet::FeatureSetMas50.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Index::Hmmer.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Matrix::PSM::PsmHeaderI.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::SeqI.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::SeqIO::agave.3pm.gz W: bioperl: manpage-has-errors-from-man usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 409: warning [p 4, 0.3i]: can't break line W: bioperl: binary-without-manpage usr/bin/bp_seqfeature_load W: bioperl: package-contains-empty-directory usr/lib/perl5/auto/Bio/ W: bioperl: copyright-without-copyright-notice W: bioperl source: binary-arch-rules-but-pkg-is-arch-indep N: N: It looks like you try to run code in the binary-arch target of N: debian/rules, even though your package is architecture- independent. N: W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_make_mrna_protein.1p.gz N: N: Each manual page should start with a `NAME' section, which lists the N: name and a brief description of the page seperated by '\-'. These N: sections are parsed by `mandb' and stored in a database for the use of N: `apropos' and `whatis', so they must be in a certain format. This N: manual page apparently uses the wrong format and cannot be parsed by N: `mandb'. N: N: For information on how `NAME' sections should be written see N: lexgrog(1). See also groff_man(7) and groff_mdoc(7) for general N: information on writing manual pages. N: W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2BSML.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2gff.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_search2tribe.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man1/bp_taxid4species.1p.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::EUtilities::ElinkData.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Expression::FeatureGroup::FeatureGroupMas50.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Expression::FeatureSet::FeatureSetMas50.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Index::Hmmer.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::Matrix::PSM::PsmHeaderI.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::OntologyIO::Handlers::BaseSAXHandler.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::SeqI.3pm.gz W: bioperl: manpage-has-bad-whatis-entry usr/share/man/man3/Bio::SeqIO::agave.3pm.gz W: bioperl: manpage-has-errors-from-man usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 409: warning [p 4, 0.3i]: can't break line N: N: This man page provokes warnings or errors from man. N: N: "cannot adjust" or "can't break" are trouble with paragraph filling, N: usually related to long lines. Adjustment can be helped by left N: justifying, breaks can be helped with hyphenation, see "Manipulating N: Filling and Adjusting" and "Manipulating Hyphenation" in the manual. N: N: "can't find numbered character" usually means latin1 etc in the input, N: and this warning indicates characters will be missing from the output. N: You can change to escapes like \[:a] described on the groff_char man N: page. N: N: Other warnings are often formatting typos, like missing quotes around N: a string argument to .IP. These are likely to result in lost or N: malformed output. See the groff_man (or groff_mdoc if using mdoc) man N: page for information on macros. N: N: This test uses man's --warnings option to enable groff warnings that N: catch common mistakes, such as putting . or ' characters at the start N: of a line when they are intended as literal text rather than groff N: commands. This can be fixed either by reformatting the paragraph so N: that these characters are not at the start of a line, or by adding a N: zero-width space (\&) immediately before them. N: N: At worst, warning messages can be disabled with the .warn directive, N: see "Debugging" in the groff manual. N: W: bioperl: binary-without-manpage usr/bin/bp_seqfeature_load N: N: Each binary in /usr/bin, /usr/sbin, /bin, /sbin or /usr/games should N: have a manual page N: N: Note that though the man program has the capability to check for N: several program names in the NAMES section, each of these programs N: should have its own manual page (a symbolic link to the appropriate N: manual page is sufficient) because other manual page viewers such as N: xman or tkman don't support this. N: N: If the man pages are provided by another package on which this package N: depends, lintian may not be able to determine that man pages are N: available. In this case, after confirming that all binaries do have N: man pages after this package and its dependencies are installed, N: please add a lintian override. N: N: Refer to Policy Manual, section 12.1 for details. N: W: bioperl: package-contains-empty-directory usr/lib/perl5/auto/Bio/ N: N: This package installs an empty directory. This might be intentional N: but it's normally a mistake. If it is intentional, add a lintian N: override. N: W: bioperl: copyright-without-copyright-notice N: N: The copyright file for this package does not appear to contain a N: copyright notice. You should copy the copyright notice from the N: upstream source (or add one of your own for a native package). A N: copyright notice must consist of Copyright, Copr., or the Unicode N: symbol of C in a circle followed by the years and the copyright N: holder. A copyright notice is not required for a work to be N: copyrighted, but Debian requires the copyright file include the N: authors and years of copyright, and including a valid copyright notice N: is the best way to do that. N: N: If the package is in the public domain rather than copyrighted, be N: sure to mention "public domain" in the copyright file. Please be aware N: that this is very rare and not the same as a DFSG-free license. True N: public domain software is generally limited to such special cases as a N: work product of a United States government agency. N: N: Refer to http://ftp-master.debian.org/REJECT-FAQ.html for details. N: