sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on +==================================================================================+ | ruby-crb-blast 0.6.9-5+rebuild1766575787 (amd64) Wed, 24 Dec 2025 11:29:48 +0000 | +==================================================================================+ Package: ruby-crb-blast Version: 0.6.9-5+rebuild1766575787 Source Version: 0.6.9-5+rebuild1766575787 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: No tarballs found in /home/admin/.cache/sbuild I: Creating chroot on-demand by running: mmdebstrap --variant=buildd --arch=amd64 --skip=output/mknod --format=tar unstable - I: Unpacking tarball from STDIN to /tmp/tmp.sbuild.WIySp8Esbz... I: automatically chosen mode: unshare I: chroot architecture amd64 is equal to the host's architecture I: finding correct signed-by value... I: using /tmp/mmdebstrap.6lcsd3XTm2 as tempdir I: skipping output/mknod as requested for ./dev/console I: skipping output/mknod as requested for ./dev/full I: skipping output/mknod as requested for ./dev/null I: skipping output/mknod as requested for ./dev/ptmx I: skipping output/mknod as requested for ./dev/random I: skipping output/mknod as requested for ./dev/tty I: skipping output/mknod as requested for ./dev/urandom I: skipping output/mknod as requested for ./dev/zero I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: installing remaining packages inside the chroot... I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.6lcsd3XTm2... I: success in 12.2254 seconds I: The chroot directory at /tmp/tmp.sbuild.WIySp8Esbz will be removed at the end of the build I: To avoid creating a new chroot from scratch every time, either: I: - place a chroot tarball at /home/admin/.cache/sbuild/unstable-amd64.tar and update it manually, for example by running: mmdebstrap --variant=buildd --arch=amd64 --skip=output/mknod --format=tar unstable /home/admin/.cache/sbuild/unstable-amd64.tar I: - or let sbuild take care of this via the setting UNSHARE_MMDEBSTRAP_KEEP_TARBALL by adding '$unshare_mmdebstrap_keep_tarball = 1;' to your ~/.config/sbuild/config.pl. I: - or completely disable this behaviour via the setting UNSHARE_MMDEBSTRAP_AUTO_CREATE by adding '$unshare_mmdebstrap_auto_create = 0;' to your ~/.config/sbuild/config.pl. I: Refer to UNSHARE_MMDEBSTRAP_KEEP_TARBALL in sbuild.conf(5) for more information I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 24 Dec 2025 11:30:03 +0000 | +------------------------------------------------------------------------------+ Ign:1 file:/mass-rebuild ./ InRelease Get:2 file:/mass-rebuild ./ Release [1617 B] Get:2 file:/mass-rebuild ./ Release [1617 B] Ign:3 file:/mass-rebuild ./ Release.gpg Get:4 file:/mass-rebuild ./ Packages [70.4 kB] Get:5 http://deb.debian.org/debian unstable InRelease [187 kB] Get:6 http://deb.debian.org/debian experimental InRelease [90.7 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages [10.2 MB] Get:8 http://deb.debian.org/debian experimental/main amd64 Packages [429 kB] Get:9 http://incoming.debian.org/debian-buildd buildd-unstable InRelease [48.9 kB] Get:10 http://incoming.debian.org/debian-buildd buildd-unstable/main amd64 Packages [103 kB] Fetched 11.1 MB in 1s (13.0 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libselinux1 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/85.8 kB of archives. After this operation, 1024 B disk space will be freed. Get:1 file:/mass-rebuild ./ libselinux1 3.9-4+rebuild1766544377 [85.8 kB] (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11800 files and directories currently installed.) Preparing to unpack .../libselinux1_3.9-4+rebuild1766544377_amd64.deb ... Unpacking libselinux1:amd64 (3.9-4+rebuild1766544377) over (3.9-4+b1) ... Setting up libselinux1:amd64 (3.9-4+rebuild1766544377) ... Processing triggers for libc-bin (2.42-6) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 24 Dec 2025 11:30:05 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /home/admin/mass-rebuild/builds/3/ruby-crb-blast/ruby-crb-blast_0.6.9-5+rebuild1766575787.dsc exists in /home/admin/mass-rebuild/builds/3/ruby-crb-blast; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 24 Dec 2025 11:30:06 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop, build-essential Filtered Build-Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-ljRtft/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ Sources [705 B] Get:5 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ Packages [744 B] Fetched 2058 B in 0s (0 B/s) Reading package lists... Ign:1 file:/mass-rebuild ./ InRelease Get:2 file:/mass-rebuild ./ Release [1617 B] Get:2 file:/mass-rebuild ./ Release [1617 B] Ign:3 file:/mass-rebuild ./ Release.gpg Hit:4 http://deb.debian.org/debian experimental InRelease Hit:5 http://incoming.debian.org/debian-buildd buildd-unstable InRelease Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gem2deb gem2deb-test-runner gettext gettext-base groff-base help2man intltool-debian isa-support libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libffi8 libfile-stripnondeterminism-perl libgmp-dev libgmpxx4ldbl liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libpipeline1 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsqlite3-0 libtool libuchardet0 libunistring5 libuv1t64 libxml2-16 libyaml-0-2 m4 man-db media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl po-debconf python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-activesupport ruby-all-dev ruby-base64 ruby-bio ruby-concurrent ruby-connection-pool ruby-csv ruby-did-you-mean ruby-facade ruby-fixwhich ruby-i18n ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-ruby2-keywords ruby-rubygems ruby-shoulda ruby-shoulda-context ruby-shoulda-matchers ruby-test-unit ruby-threach ruby-trollop ruby-tzinfo ruby-webrick ruby-xmlrpc ruby3.3 ruby3.3-dev rubygems-integration sensible-utils sse4.2-support tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make git-buildpackage pristine-tar gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff gmp-doc libgmp10-doc libmpfr-dev libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support readline-doc ri ruby-dev clustalw emboss bundler Recommended packages: apt-file debian-policy devscripts python3-debian curl | wget | lynx libarchive-cpio-perl libgpm2 ruby-sdbm libltdl-dev libmail-sendmail-perl zip ncbi-blast+-legacy hmmer mafft muscle probcons sim4 t-coffee fonts-lato libjs-jquery ruby3.3-doc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gem2deb gem2deb-test-runner gettext gettext-base groff-base help2man intltool-debian isa-support libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libffi8 libfile-stripnondeterminism-perl libgmp-dev libgmpxx4ldbl liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libpipeline1 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsqlite3-0 libtool libuchardet0 libunistring5 libuv1t64 libxml2-16 libyaml-0-2 m4 man-db media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl po-debconf python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-activesupport ruby-all-dev ruby-base64 ruby-bio ruby-concurrent ruby-connection-pool ruby-csv ruby-did-you-mean ruby-facade ruby-fixwhich ruby-i18n ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-ruby2-keywords ruby-rubygems ruby-shoulda ruby-shoulda-context ruby-shoulda-matchers ruby-test-unit ruby-threach ruby-trollop ruby-tzinfo ruby-webrick ruby-xmlrpc ruby3.3 ruby3.3-dev rubygems-integration sbuild-build-depends-main-dummy sensible-utils sse4.2-support tzdata 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 55.0 MB/55.3 MB of archives. After this operation, 227 MB of additional disk space will be used. Get:1 file:/mass-rebuild ./ ruby-concurrent 1.3.5-1+rebuild1766546725 [291 kB] Get:2 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B] Get:3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.11-1+b1 [866 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.11-1+b1 [2254 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.9-2 [27.5 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025c-3 [263 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-3 [26.1 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libncursesw6 amd64 6.5+20251123-1 [136 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.11-1+b1 [1968 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.11-1+b1 [770 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.9-2 [10.5 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.9-2 [27.5 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 isa-support amd64 27 [14.9 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 sse4.2-support amd64 27 [3692 B] Get:22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.3-2 [98.9 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.29 [92.6 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:45 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.29 [943 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get:54 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get:58 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get:64 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get:66 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 ruby-minitest all 5.26.1-1 [67.3 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 ruby-power-assert all 2.0.5-1 [11.7 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 ruby-test-unit all 3.6.2-1 [79.1 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 gem2deb-test-runner amd64 2.2.6 [18.4 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 ruby3.3-dev amd64 3.3.8-2 [1045 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 ruby-all-dev amd64 1:3.3+b1 [6496 B] Get:75 http://deb.debian.org/debian unstable/main amd64 gem2deb amd64 2.2.6 [48.3 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.5-0.1 [363 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.5-0.1 [152 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.5-0.1 [246 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.17.0+ds-6 [17.0 MB] Get:87 http://deb.debian.org/debian unstable/main amd64 ruby-i18n all 1.14.7-1 [41.7 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 ruby-tzinfo all 2.0.6-1 [66.7 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 ruby-connection-pool all 2.5.4-1 [12.1 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 ruby-base64 all 0.3.0-1 [8304 B] Get:91 http://deb.debian.org/debian unstable/main amd64 ruby-activesupport all 2:7.2.2.2+dfsg-2 [223 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 ruby-bio all 2.0.6-1 [706 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 ruby-facade all 1.2.1-1 [8996 B] Get:94 http://deb.debian.org/debian unstable/main amd64 ruby-pathname2 all 1.8.4-1 [18.1 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 ruby-fixwhich all 1.0.2-2 [4284 B] Get:96 http://deb.debian.org/debian unstable/main amd64 ruby-shoulda-context all 2.0.0-4 [17.8 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 ruby-shoulda-matchers all 7.0.1+dfsg-1 [103 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 ruby-shoulda all 4.0.0-4 [6288 B] Get:99 http://deb.debian.org/debian unstable/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get:100 http://deb.debian.org/debian unstable/main amd64 ruby-trollop all 2.9.10-1 [19.5 kB] Preconfiguring packages ... Fetched 55.0 MB in 2s (36.6 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11799 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.11-1+b1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.11-1+b1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.11-1+b1_amd64.deb ... Unpacking python3.13-minimal (3.13.11-1+b1) ... Setting up libpython3.13-minimal:amd64 (3.13.11-1+b1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.11-1+b1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12150 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.13.9-2_amd64.deb ... Unpacking python3-minimal (3.13.9-2) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2025c-3_all.deb ... Unpacking tzdata (2025c-3) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../04-libffi8_3.5.2-3_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-3) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.5+20251123-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20251123-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../07-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../09-libpython3.13-stdlib_3.13.11-1+b1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.11-1+b1) ... Selecting previously unselected package python3.13. Preparing to unpack .../10-python3.13_3.13.11-1+b1_amd64.deb ... Unpacking python3.13 (3.13.11-1+b1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../11-libpython3-stdlib_3.13.9-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.9-2) ... Setting up python3-minimal (3.13.9-2) ... Selecting previously unselected package python3. (Reading database ... 13183 files and directories currently installed.) Preparing to unpack .../python3_3.13.9-2_amd64.deb ... Unpacking python3 (3.13.9-2) ... Selecting previously unselected package isa-support:amd64. Preparing to unpack .../isa-support_27_amd64.deb ... Unpacking isa-support:amd64 (27) ... Setting up isa-support:amd64 (27) ... Selecting previously unselected package sse4.2-support. (Reading database ... 13225 files and directories currently installed.) Preparing to unpack .../00-sse4.2-support_27_amd64.deb ... Unpacking sse4.2-support (27) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.4-1_amd64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.2-1_amd64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-10_amd64.deb ... Unpacking groff-base (1.23.0-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.3-2_amd64.deb ... Unpacking bsdextrautils (2.41.3-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-2) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.18.1-3_all.deb ... Unpacking automake (1:1.18.1-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.2-1_all.deb ... Unpacking autopoint (0.23.2-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.29_all.deb ... Unpacking libdebhelper-perl (13.29) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-9_all.deb ... Unpacking libtool (2.5.4-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../24-libelf1t64_0.194-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../26-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../27-libxml2-16_2.15.1+dfsg-2+b1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.23.2-1_amd64.deb ... Unpacking gettext (0.23.2-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.29_all.deb ... Unpacking debhelper (13.29) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../32-rubygems-integration_1.19_all.deb ... Unpacking rubygems-integration (1.19) ... Selecting previously unselected package ruby-csv. Preparing to unpack .../33-ruby-csv_3.3.4-1_all.deb ... Unpacking ruby-csv (3.3.4-1) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../34-ruby-did-you-mean_1.6.3-2_all.deb ... Unpacking ruby-did-you-mean (1.6.3-2) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../35-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-ruby2-keywords. Preparing to unpack .../36-ruby-ruby2-keywords_0.0.5-1_all.deb ... Unpacking ruby-ruby2-keywords (0.0.5-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../37-ruby-webrick_1.9.1-1_all.deb ... Unpacking ruby-webrick (1.9.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../38-ruby-xmlrpc_0.3.3-2_all.deb ... Unpacking ruby-xmlrpc (0.3.3-2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../39-libyaml-0-2_0.2.5-2+b1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2+b1) ... Selecting previously unselected package libruby3.3:amd64. Preparing to unpack .../40-libruby3.3_3.3.8-2_amd64.deb ... Unpacking libruby3.3:amd64 (3.3.8-2) ... Selecting previously unselected package ruby3.3. Preparing to unpack .../41-ruby3.3_3.3.8-2_amd64.deb ... Unpacking ruby3.3 (3.3.8-2) ... Selecting previously unselected package libruby:amd64. Preparing to unpack .../42-libruby_1%3a3.3+b1_amd64.deb ... Unpacking libruby:amd64 (1:3.3+b1) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../43-ruby-rubygems_3.6.7-2_all.deb ... Unpacking ruby-rubygems (3.6.7-2) ... Selecting previously unselected package ruby. Preparing to unpack .../44-ruby_1%3a3.3+b1_amd64.deb ... Unpacking ruby (1:3.3+b1) ... Selecting previously unselected package rake. Preparing to unpack .../45-rake_13.2.1-1_all.deb ... Unpacking rake (13.2.1-1) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../46-ruby-minitest_5.26.1-1_all.deb ... Unpacking ruby-minitest (5.26.1-1) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../47-ruby-power-assert_2.0.5-1_all.deb ... Unpacking ruby-power-assert (2.0.5-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../48-ruby-test-unit_3.6.2-1_all.deb ... Unpacking ruby-test-unit (3.6.2-1) ... Selecting previously unselected package gem2deb-test-runner. Preparing to unpack .../49-gem2deb-test-runner_2.2.6_amd64.deb ... Unpacking gem2deb-test-runner (2.2.6) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../50-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../51-libgmp-dev_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package ruby3.3-dev:amd64. Preparing to unpack .../52-ruby3.3-dev_3.3.8-2_amd64.deb ... Unpacking ruby3.3-dev:amd64 (3.3.8-2) ... Selecting previously unselected package ruby-all-dev:amd64. Preparing to unpack .../53-ruby-all-dev_1%3a3.3+b1_amd64.deb ... Unpacking ruby-all-dev:amd64 (1:3.3+b1) ... Selecting previously unselected package gem2deb. Preparing to unpack .../54-gem2deb_2.2.6_amd64.deb ... Unpacking gem2deb (2.2.6) ... Selecting previously unselected package help2man. Preparing to unpack .../55-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../56-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../57-libmbedcrypto16_3.6.5-0.1_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.5-0.1) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../58-libmbedx509-7_3.6.5-0.1_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.5-0.1) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../59-libmbedtls21_3.6.5-0.1_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.5-0.1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../60-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../61-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../62-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../63-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../64-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../65-ncbi-blast+_2.17.0+ds-6_amd64.deb ... Unpacking ncbi-blast+ (2.17.0+ds-6) ... Selecting previously unselected package ruby-concurrent. Preparing to unpack .../66-ruby-concurrent_1.3.5-1+rebuild1766546725_all.deb ... Unpacking ruby-concurrent (1.3.5-1+rebuild1766546725) ... Selecting previously unselected package ruby-i18n. Preparing to unpack .../67-ruby-i18n_1.14.7-1_all.deb ... Unpacking ruby-i18n (1.14.7-1) ... Selecting previously unselected package ruby-tzinfo. Preparing to unpack .../68-ruby-tzinfo_2.0.6-1_all.deb ... Unpacking ruby-tzinfo (2.0.6-1) ... Selecting previously unselected package ruby-connection-pool. Preparing to unpack .../69-ruby-connection-pool_2.5.4-1_all.deb ... Unpacking ruby-connection-pool (2.5.4-1) ... Selecting previously unselected package ruby-base64. Preparing to unpack .../70-ruby-base64_0.3.0-1_all.deb ... Unpacking ruby-base64 (0.3.0-1) ... Selecting previously unselected package ruby-activesupport. Preparing to unpack .../71-ruby-activesupport_2%3a7.2.2.2+dfsg-2_all.deb ... Unpacking ruby-activesupport (2:7.2.2.2+dfsg-2) ... Selecting previously unselected package ruby-bio. Preparing to unpack .../72-ruby-bio_2.0.6-1_all.deb ... Unpacking ruby-bio (2.0.6-1) ... Selecting previously unselected package ruby-facade. Preparing to unpack .../73-ruby-facade_1.2.1-1_all.deb ... Unpacking ruby-facade (1.2.1-1) ... Selecting previously unselected package ruby-pathname2. Preparing to unpack .../74-ruby-pathname2_1.8.4-1_all.deb ... Unpacking ruby-pathname2 (1.8.4-1) ... Selecting previously unselected package ruby-fixwhich. Preparing to unpack .../75-ruby-fixwhich_1.0.2-2_all.deb ... Unpacking ruby-fixwhich (1.0.2-2) ... Selecting previously unselected package ruby-shoulda-context. Preparing to unpack .../76-ruby-shoulda-context_2.0.0-4_all.deb ... Unpacking ruby-shoulda-context (2.0.0-4) ... Selecting previously unselected package ruby-shoulda-matchers. Preparing to unpack .../77-ruby-shoulda-matchers_7.0.1+dfsg-1_all.deb ... Unpacking ruby-shoulda-matchers (7.0.1+dfsg-1) ... Selecting previously unselected package ruby-shoulda. Preparing to unpack .../78-ruby-shoulda_4.0.0-4_all.deb ... Unpacking ruby-shoulda (4.0.0-4) ... Selecting previously unselected package ruby-threach. Preparing to unpack .../79-ruby-threach_0.2.0-2_all.deb ... Unpacking ruby-threach (0.2.0-2) ... Selecting previously unselected package ruby-trollop. Preparing to unpack .../80-ruby-trollop_2.9.10-1_all.deb ... Unpacking ruby-trollop (2.9.10-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../81-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:amd64 (1.5.8-2) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up ruby-ruby2-keywords (0.0.5-1) ... Setting up bsdextrautils (2.41.3-2) ... Setting up ruby-facade (1.2.1-1) ... Setting up ruby-power-assert (2.0.5-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Setting up libdebhelper-perl (13.29) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.20-2) ... Setting up ruby-trollop (2.9.10-1) ... Setting up file (1:5.46-5) ... Setting up ruby-concurrent (1.3.5-1+rebuild1766546725) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up tzdata (2025c-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 24 11:30:16 UTC 2025. Universal Time is now: Wed Dec 24 11:30:16 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ruby-minitest (5.26.1-1) ... Setting up autotools-dev (20240727.1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up ruby-test-unit (3.6.2-1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up ruby-csv (3.3.4-1) ... Setting up ruby-base64 (0.3.0-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.2-1) ... Setting up ruby-i18n (1.14.7-1) ... Setting up libncursesw6:amd64 (6.5+20251123-1) ... Setting up autoconf (2.72-3.1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up libffi8:amd64 (3.5.2-3) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up ruby-pathname2 (1.8.4-1) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up sse4.2-support (27) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up ruby-connection-pool (2.5.4-1) ... Setting up libmbedcrypto16:amd64 (3.6.5-0.1) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up openssl (3.5.4-1) ... Setting up readline-common (8.3-3) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up ruby-bio (2.0.6-1) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up libtool (2.5.4-9) ... Setting up ruby-tzinfo (2.0.6-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libmbedx509-7:amd64 (3.6.5-0.1) ... Setting up libmbedtls21:amd64 (3.6.5-0.1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-10) ... Setting up libpython3.13-stdlib:amd64 (3.13.11-1+b1) ... Setting up libpython3-stdlib:amd64 (3.13.9-2) ... Setting up python3.13 (3.13.11-1+b1) ... Setting up po-debconf (1.0.22) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.9-2) ... Setting up rubygems-integration (1.19) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up ncbi-blast+ (2.17.0+ds-6) ... Setting up debhelper (13.29) ... Setting up ruby3.3 (3.3.8-2) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-threach (0.2.0-2) ... Setting up rake (13.2.1-1) ... Setting up ruby-fixwhich (1.0.2-2) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-activesupport (2:7.2.2.2+dfsg-2) ... Setting up ruby-shoulda-context (2.0.0-4) ... Setting up gem2deb-test-runner (2.2.6) ... Setting up ruby-shoulda-matchers (7.0.1+dfsg-1) ... Setting up ruby3.3-dev:amd64 (3.3.8-2) ... Setting up ruby-shoulda (4.0.0-4) ... Setting up ruby-all-dev:amd64 (1:3.3+b1) ... Setting up gem2deb (2.2.6) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-6) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Wed, 24 Dec 2025 11:30:19 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Wed, 24 Dec 2025 11:30:19 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) amd64 (x86_64) Toolchain package versions: binutils_2.45.50.20251209-1 dpkg-dev_1.23.3 g++-15_15.2.0-12 gcc-15_15.2.0-12 libc6-dev_2.42-6 libstdc++-15-dev_15.2.0-12 libstdc++6_15.2.0-12 linux-libc-dev_6.17.13-1 Package versions: apt_3.1.12 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45.50.20251209-1 binutils-common_2.45.50.20251209-1 binutils-x86-64-linux-gnu_2.45.50.20251209-1 bsdextrautils_2.41.3-2 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-12 cpp-15-x86-64-linux-gnu_15.2.0-12 cpp-x86-64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.29 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.3 dpkg-dev_1.23.3 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-12 g++-15-x86-64-linux-gnu_15.2.0-12 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-12 gcc-15-base_15.2.0-12 gcc-15-x86-64-linux-gnu_15.2.0-12 gcc-x86-64-linux-gnu_4:15.2.0-4 gem2deb_2.2.6 gem2deb-test-runner_2.2.6 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 isa-support_27 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.12 libarchive-zip-perl_1.68-1 libasan8_15.2.0-12 libatomic1_15.2.0-12 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.45.50.20251209-1 libblkid1_2.41.3-2 libbz2-1.0_1.0.8-6 libc-bin_2.42-6 libc-dev-bin_2.42-6 libc-gconv-modules-extra_2.42-6 libc6_2.42-6 libc6-dev_2.42-6 libcap-ng0_0.8.5-4+b2 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-12 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45.50.20251209-1 libctf0_2.45.50.20251209-1 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.29 libdpkg-perl_1.23.3 libelf1t64_0.194-1 libexpat1_2.7.3-1 libffi8_3.5.2-3 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-12 libgcc-s1_15.2.0-12 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 libgmpxx4ldbl_2:6.3.0+dfsg-5 libgomp1_15.2.0-12 libgprofng0_2.45.50.20251209-1 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-12 libisl23_0.27-1 libitm1_15.2.0-12 libjansson4_2.14-2+b4 liblmdb0_0.9.31-1+b2 liblocale-gettext-perl_1.07-7+b1 liblsan0_15.2.0-12 liblz4-1_1.10.0-6 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmbedcrypto16_3.6.5-0.1 libmbedtls21_3.6.5-0.1 libmbedx509-7_3.6.5-0.1 libmd0_1.1.0-2+b1 libmount1_2.41.3-2 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncbi-vdb3_3.2.1+dfsg-2 libncursesw6_6.5+20251123-1 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libpython3-stdlib_3.13.9-2 libpython3.13-minimal_3.13.11-1+b1 libpython3.13-stdlib_3.13.11-1+b1 libquadmath0_15.2.0-12 libreadline8t64_8.3-3 libruby_1:3.3+b1 libruby3.3_3.3.8-2 libseccomp2_2.6.0-2+b1 libselinux1_3.9-4+rebuild1766544377 libsframe2_2.45.50.20251209-1 libsmartcols1_2.41.3-2 libsqlite3-0_3.46.1-8 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-12 libstdc++6_15.2.0-12 libsystemd0_259-1 libtinfo6_6.5+20251123-1 libtool_2.5.4-9 libtsan2_15.2.0-12 libubsan1_15.2.0-12 libuchardet0_0.0.8-2 libudev1_259-1 libunistring5_1.3-2 libuuid1_2.41.3-2 libuv1t64_1.51.0-2 libxml2-16_2.15.1+dfsg-2+b1 libxxhash0_0.8.3-2 libyaml-0-2_0.2.5-2+b1 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.13-1 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-2 media-types_14.0.0 ncbi-blast+_2.17.0+ds-6 ncbi-data_6.1.20170106+dfsg2-6 ncbi-vdb-data_3.2.1+dfsg-2 ncurses-base_6.5+20251123-1 ncurses-bin_6.5+20251123-1 netbase_6.5 openssl_3.5.4-1 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 python3_3.13.9-2 python3-minimal_3.13.9-2 python3.13_3.13.11-1+b1 python3.13-minimal_3.13.11-1+b1 rake_13.2.1-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 ruby_1:3.3+b1 ruby-activesupport_2:7.2.2.2+dfsg-2 ruby-all-dev_1:3.3+b1 ruby-base64_0.3.0-1 ruby-bio_2.0.6-1 ruby-concurrent_1.3.5-1+rebuild1766546725 ruby-connection-pool_2.5.4-1 ruby-csv_3.3.4-1 ruby-did-you-mean_1.6.3-2 ruby-facade_1.2.1-1 ruby-fixwhich_1.0.2-2 ruby-i18n_1.14.7-1 ruby-minitest_5.26.1-1 ruby-net-telnet_0.2.0-1 ruby-pathname2_1.8.4-1 ruby-power-assert_2.0.5-1 ruby-ruby2-keywords_0.0.5-1 ruby-rubygems_3.6.7-2 ruby-shoulda_4.0.0-4 ruby-shoulda-context_2.0.0-4 ruby-shoulda-matchers_7.0.1+dfsg-1 ruby-test-unit_3.6.2-1 ruby-threach_0.2.0-2 ruby-trollop_2.9.10-1 ruby-tzinfo_2.0.6-1 ruby-webrick_1.9.1-1 ruby-xmlrpc_0.3.3-2 ruby3.3_3.3.8-2 ruby3.3-dev_3.3.8-2 rubygems-integration_1.19 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sse4.2-support_27 sysvinit-utils_3.15-6 tar_1.35+dfsg-3.1 tzdata_2025c-3 util-linux_2.41.3-2 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b2 +------------------------------------------------------------------------------+ | Build Wed, 24 Dec 2025 11:30:19 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- Format: 3.0 (quilt) Source: ruby-crb-blast Binary: ruby-crb-blast Architecture: all Version: 0.6.9-5+rebuild1766575787 Maintainer: Debian Ruby Team Uploaders: Michael R. Crusoe Homepage: https://github.com/cboursnell/crb-blast Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/ruby-team/ruby-crb-blast Vcs-Git: https://salsa.debian.org/ruby-team/ruby-crb-blast.git Testsuite: autopkgtest-pkg-ruby Build-Depends: debhelper-compat (= 13), gem2deb, help2man, ncbi-blast+, rake, ruby-bio, ruby-fixwhich, ruby-shoulda, ruby-threach, ruby-trollop Package-List: ruby-crb-blast deb ruby optional arch=all Checksums-Sha1: 05a16625e3947180cfd1d23e11e0cc33e59ba998 37227 ruby-crb-blast_0.6.9.orig.tar.gz 73d8a91c624581fe81a61e0020d0d369ae9135c3 5808 ruby-crb-blast_0.6.9-5+rebuild1766575787.debian.tar.xz Checksums-Sha256: 08af1561894b06df022485792be28d754d56fc1147ba1aa6c9c16e1aef179725 37227 ruby-crb-blast_0.6.9.orig.tar.gz 959746af94ff8f3a9bf4e9eab613d95d3876083b7a4a5cde6a9a6f672bfa1bd4 5808 ruby-crb-blast_0.6.9-5+rebuild1766575787.debian.tar.xz Files: 21fae4bdec5d3523e2f6fd6a18917fca 37227 ruby-crb-blast_0.6.9.orig.tar.gz 806d92571910db33cd01ddb6ffe08c8a 5808 ruby-crb-blast_0.6.9-5+rebuild1766575787.debian.tar.xz Ruby-Versions: all dpkg-source: warning: extracting unsigned source package (ruby-crb-blast_0.6.9-5+rebuild1766575787.dsc) dpkg-source: info: extracting ruby-crb-blast in /build/reproducible-path/ruby-crb-blast-0.6.9 dpkg-source: info: unpacking ruby-crb-blast_0.6.9.orig.tar.gz dpkg-source: info: unpacking ruby-crb-blast_0.6.9-5+rebuild1766575787.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_less_threads dpkg-source: info: applying file_existance_rename dpkg-source: info: applying drop-coverage-check dpkg-source: info: applying drop-bindeps-req dpkg-source: info: applying adjust-test dpkg-source: info: applying relax-bio.patch dpkg-source: info: applying drop-git-in-gemspec.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Wed, 24 Dec 2025 11:30:20 +0000 | +------------------------------------------------------------------------------+ apt-get update -q && apt-get install -t experimental -qy ruby-all-dev --------------------------------------------------------------------- Ign:1 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ InRelease Ign:2 file:/mass-rebuild ./ InRelease Get:3 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ Release [609 B] Get:4 file:/mass-rebuild ./ Release [1617 B] Ign:5 copy:/build/reproducible-path/resolver-ljRtft/apt_archive ./ Release.gpg Get:4 file:/mass-rebuild ./ Release [1617 B] Ign:6 file:/mass-rebuild ./ Release.gpg Hit:7 http://deb.debian.org/debian unstable InRelease Hit:8 http://deb.debian.org/debian experimental InRelease Hit:9 http://incoming.debian.org/debian-buildd buildd-unstable InRelease Fetched 609 B in 0s (1369 B/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libruby3.4 ruby3.4 ruby3.4-dev Recommended packages: ruby-sdbm fonts-lato libjs-jquery ruby3.4-doc The following NEW packages will be installed: libruby3.4 ruby3.4 ruby3.4-dev The following packages will be upgraded: ruby-all-dev 1 upgraded, 3 newly installed, 0 to remove and 26 not upgraded. Need to get 8784 kB of archives. After this operation, 36.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian experimental/main amd64 libruby3.4 amd64 3.4.5-1~exp1 [6731 kB] Get:2 http://deb.debian.org/debian experimental/main amd64 ruby3.4 amd64 3.4.5-1~exp1 [920 kB] Get:3 http://deb.debian.org/debian experimental/main amd64 ruby3.4-dev amd64 3.4.5-1~exp1 [1127 kB] Get:4 http://deb.debian.org/debian experimental/main amd64 ruby-all-dev amd64 1:3.3+support3.4~0 [6292 B] debconf: unable to initialize frontend: Dialog debconf: (TERM is not set, so the dialog frontend is not usable.) debconf: falling back to frontend: Readline Fetched 8784 kB in 0s (76.6 MB/s) Selecting previously unselected package libruby3.4:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21406 files and directories currently installed.) Preparing to unpack .../libruby3.4_3.4.5-1~exp1_amd64.deb ... Unpacking libruby3.4:amd64 (3.4.5-1~exp1) ... Selecting previously unselected package ruby3.4. Preparing to unpack .../ruby3.4_3.4.5-1~exp1_amd64.deb ... Unpacking ruby3.4 (3.4.5-1~exp1) ... Selecting previously unselected package ruby3.4-dev:amd64. Preparing to unpack .../ruby3.4-dev_3.4.5-1~exp1_amd64.deb ... Unpacking ruby3.4-dev:amd64 (3.4.5-1~exp1) ... Preparing to unpack .../ruby-all-dev_1%3a3.3+support3.4~0_amd64.deb ... Unpacking ruby-all-dev:amd64 (1:3.3+support3.4~0) over (1:3.3+b1) ... Setting up libruby3.4:amd64 (3.4.5-1~exp1) ... Setting up ruby3.4 (3.4.5-1~exp1) ... Setting up ruby3.4-dev:amd64 (3.4.5-1~exp1) ... Setting up ruby-all-dev:amd64 (1:3.3+support3.4~0) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.42-6) ... I: Finished running 'apt-get update -q && apt-get install -t experimental -qy ruby-all-dev'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ADDRESS=pt_BR.UTF-8 LC_ALL=C.UTF-8 LC_IDENTIFICATION=pt_BR.UTF-8 LC_MEASUREMENT=pt_BR.UTF-8 LC_MONETARY=pt_BR.UTF-8 LC_NAME=pt_BR.UTF-8 LC_NUMERIC=pt_BR.UTF-8 LC_PAPER=pt_BR.UTF-8 LC_TELEPHONE=pt_BR.UTF-8 LC_TIME=pt_BR.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mAutomated rebuild -b dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5+rebuild1766575787 dpkg-buildpackage: info: source distribution UNRELEASED dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=ruby --with ruby dh_auto_clean -O--buildsystem=ruby dh_ruby --clean W: XS-Ruby-Versions is deprecated, and will be ignored dh_autoreconf_clean -O--buildsystem=ruby dh_clean -O--buildsystem=ruby debian/rules binary dh binary --buildsystem=ruby --with ruby dh_update_autotools_config -O--buildsystem=ruby dh_autoreconf -O--buildsystem=ruby dh_auto_configure -O--buildsystem=ruby dh_ruby --configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_build dh_ruby --build RUBYLIB=lib help2man --no-info --name='Conditional Reciprocal Best BLAST' \ bin/crb-blast > debian/crb-blast.1 make[1]: Leaving directory '/build/reproducible-path/ruby-crb-blast-0.6.9' dh_auto_test -O--buildsystem=ruby dh_ruby --test create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=ruby dh_prep -O--buildsystem=ruby dh_auto_install --destdir=debian/ruby-crb-blast/ -O--buildsystem=ruby dh_ruby --install /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install files │ └──────────────────────────────────────────────────────────────────────────────┘ install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin install -D -m755 /build/reproducible-path/ruby-crb-blast-0.6.9/bin/crb-blast /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast install -d /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/cmd.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/cmd.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/crb-blast.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/hit.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/hit.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast/version.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast/version.rb install -D -m644 /build/reproducible-path/ruby-crb-blast-0.6.9/lib/crb-blast.rb /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby/crb-blast.rb Rewriting shebang line of /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/bin/crb-blast ┌──────────────────────────────────────────────────────────────────────────────┐ │ ruby-crb-blast: Install Rubygems integration metadata │ └──────────────────────────────────────────────────────────────────────────────┘ generating gemspec at /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all/specifications/crb-blast-0.6.9.gemspec /usr/bin/ruby3.3 /usr/bin/gem2deb-test-runner ┌──────────────────────────────────────────────────────────────────────────────┐ │ Checking Rubygems dependency resolution on ruby3.3 │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.3.0:/var/lib/gems/3.3.0:/usr/local/lib/ruby/gems/3.3.0:/usr/lib/ruby/gems/3.3.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.3.0:/usr/share/rubygems-integration/3.3.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.3.0 ruby3.3 -e gem\ \"crb-blast\" ┌──────────────────────────────────────────────────────────────────────────────┐ │ Run tests for ruby3.3 from debian/ruby-tests.rake │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.3.0:/var/lib/gems/3.3.0:/usr/local/lib/ruby/gems/3.3.0:/usr/lib/ruby/gems/3.3.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.3.0:/usr/share/rubygems-integration/3.3.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.3.0 ruby3.3 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake /usr/bin/ruby3.3 -w -I"test" /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: `*' interpreted as argument prefix /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:29: warning: assigned but unused variable - blaster /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:45: warning: assigned but unused variable - dbs /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:46: warning: assigned but unused variable - run /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:47: warning: assigned but unused variable - load Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: test: crb-blast should add secondary hits. : .: (0.352726) test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.341253) test: crb-blast should break input file into pieces. :.: (0.341886) test: crb-blast should find reciprocals. : .: (0.341034) test: crb-blast should get non reciprocal hits. : .: (0.348800) test: crb-blast should load output should check if the databases exist. : .: (0.342867) test: crb-blast should run blast should check if the databases exist yet. : .: (0.340719) test: crb-blast should setup2 should run ok. : .: (0.342603) Test3CRBBlast: test: crb-blast should raise error when files don't exist. : .: (0.000579) test: crb-blast should run. : .: (0.397920) test: crb-blast should work for query sequences with pipes. : .: (0.304673) TestBinary: test: crb-blast should run binary. : .: (0.102683) TestCRBBlast: test: crb-blast should check if contig has reciprocal hit. : .: (0.361124) test: crb-blast should determine that the target is a protein sequence. : .: (0.358160) test: crb-blast should find reciprocals. : .: (0.359804) test: crb-blast should get number of reciprocals. : .: (0.360766) test: crb-blast should get query results. : .: (0.361547) test: crb-blast should load outputs. : .: (0.359741) test: crb-blast should not find fake scaffold name. : .: (0.358693) test: crb-blast should output all reciprocal hits. : .: (0.359051) test: crb-blast should run blast. : .: (0.358748) test: crb-blast should setup should run ok. : .: (0.360046) Finished in 7.156725506 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- 3.07 tests/s, 5.87 assertions/s /usr/bin/ruby3.4 /usr/bin/gem2deb-test-runner ┌──────────────────────────────────────────────────────────────────────────────┐ │ Checking Rubygems dependency resolution on ruby3.4 │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.4.0:/var/lib/gems/3.4.0:/usr/local/lib/ruby/gems/3.4.0:/usr/lib/ruby/gems/3.4.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.4.0:/usr/share/rubygems-integration/3.4.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.4.0 ruby3.4 -e gem\ \"crb-blast\" ┌──────────────────────────────────────────────────────────────────────────────┐ │ Run tests for ruby3.4 from debian/ruby-tests.rake │ └──────────────────────────────────────────────────────────────────────────────┘ RUBYLIB=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/lib/ruby/vendor_ruby:. GEM_PATH=/build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast/usr/share/rubygems-integration/all:/build/reproducible-path/ruby-crb-blast-0.6.9/debian/.debhelper/generated/_source/home/.local/share/gem/ruby/3.4.0:/var/lib/gems/3.4.0:/usr/local/lib/ruby/gems/3.4.0:/usr/lib/ruby/gems/3.4.0:/usr/lib/x86_64-linux-gnu/ruby/gems/3.4.0:/usr/share/rubygems-integration/3.4.0:/usr/share/rubygems-integration/all:/usr/lib/x86_64-linux-gnu/rubygems-integration/3.4.0 ruby3.4 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake /usr/bin/ruby3.4 -w -I"test" /usr/lib/ruby/gems/3.4.0/gems/rake-13.2.1/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: ambiguous `*` has been interpreted as an argument prefix /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:29: warning: assigned but unused variable - blaster /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:45: warning: assigned but unused variable - dbs /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:46: warning: assigned but unused variable - run /build/reproducible-path/ruby-crb-blast-0.6.9/test/test_test3.rb:47: warning: assigned but unused variable - load :136:in 'Kernel#require': superclass mismatch for class Pathname (TypeError) from :136:in 'Kernel#require' from /usr/lib/ruby/3.4.0/pathname.rb:13:in '' from :136:in 'Kernel#require' from :136:in 'Kernel#require' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/ui/console/testrunner.rb:13:in '' from :136:in 'Kernel#require' from :136:in 'Kernel#require' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/runner/console.rb:12:in 'block in ' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:427:in 'block (2 levels) in Test::Unit::AutoRunner#options' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:426:in 'Array#each' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:426:in 'block in Test::Unit::AutoRunner#options' from /usr/lib/ruby/3.4.0/optparse.rb:1188:in 'OptionParser#initialize' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:204:in 'Class#new' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:204:in 'Test::Unit::AutoRunner#options' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:194:in 'Test::Unit::AutoRunner#process_args' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit/autorunner.rb:66:in 'Test::Unit::AutoRunner.run' from /usr/lib/ruby/gems/3.4.0/gems/test-unit-3.6.7/lib/test/unit.rb:518:in 'block (2 levels) in ' rake aborted! Command failed with status (1): [ruby -w -I"test" /usr/lib/ruby/gems/3.4.0/gems/rake-13.2.1/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v] Tasks: TOP => default (See full trace by running task with --trace) /usr/lib/ruby/vendor_ruby/gem2deb.rb:52:in `run': /usr/bin/ruby3.4 /usr/bin/gem2deb-test-runner (Gem2Deb::CommandFailed) from /usr/lib/ruby/vendor_ruby/gem2deb.rb:64:in `block in run_ruby' from /usr/lib/ruby/vendor_ruby/gem2deb.rb:87:in `maybe_crossbuild' from /usr/lib/ruby/vendor_ruby/gem2deb.rb:63:in `run_ruby' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:189:in `run_tests_for_version' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:176:in `block in run_tests' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:175:in `each' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:175:in `run_tests' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:71:in `run_tests' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:57:in `install' from /usr/lib/ruby/vendor_ruby/gem2deb/dh_ruby.rb:163:in `install' from /usr/bin/dh_ruby:89:in `
' dh_auto_install: error: dh_ruby --install /build/reproducible-path/ruby-crb-blast-0.6.9/debian/ruby-crb-blast returned exit code 1 make: *** [debian/rules:18: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-12-24T11:30:33Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Wed, 24 Dec 2025 11:30:33 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Wed, 24 Dec 2025 11:30:33 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 640 Build-Time: 11 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 13 Job: /home/admin/mass-rebuild/builds/3/ruby-crb-blast/ruby-crb-blast_0.6.9-5+rebuild1766575787.dsc Machine Architecture: amd64 Package: ruby-crb-blast Package-Time: 45 Source-Version: 0.6.9-5+rebuild1766575787 Space: 640 Status: attempted Version: 0.6.9-5+rebuild1766575787 -------------------------------------------------------------------------------- Finished at 2025-12-24T11:30:33Z Build needed 00:00:45, 640k disk space