sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on c7a-large-1790952113 +==============================================================================+ | python-bioregistry 0.11.12-3 (amd64) Fri, 02 Oct 2026 16:22:16 +0000 | +==============================================================================+ Package: python-bioregistry Version: 0.11.12-3 Source Version: 0.11.12-3 Distribution: sid-unshare Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: Unpacking /var/lib/buildd/.cache/sbuild/sid-unshare-amd64.tar.gz to /tmp/tmp.sbuild.cqm3jO9S1Q... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: Setting up apt archive... I: NOTICE: Log filtering will replace 'build/python-bioregistry-J4ZzLR/resolver-wVfVIc' with '<>' +------------------------------------------------------------------------------+ | Update chroot Fri, 02 Oct 2026 16:22:21 +0000 | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/non-free Sources [84.4 kB] Get:3 http://deb.debian.org/debian sid/non-free-firmware Sources [10.6 kB] Get:4 http://deb.debian.org/debian sid/contrib Sources [65.9 kB] Get:5 http://deb.debian.org/debian sid/main Sources [12.0 MB] Get:6 http://deb.debian.org/debian sid/non-free amd64 Packages [132 kB] Get:7 http://deb.debian.org/debian sid/non-free-firmware amd64 Packages [11.0 kB] Get:8 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:9 http://deb.debian.org/debian sid/contrib amd64 Packages [64.1 kB] Fetched 23.3 MB in 1s (19.4 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Fri, 02 Oct 2026 16:22:23 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'python-bioregistry' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bioregistry.git Please use: git clone https://salsa.debian.org/med-team/bioregistry.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6000 kB of source archives. Get:1 http://deb.debian.org/debian sid/main python-bioregistry 0.11.12-3 (dsc) [2627 B] Get:2 http://deb.debian.org/debian sid/main python-bioregistry 0.11.12-3 (tar) [5989 kB] Get:3 http://deb.debian.org/debian sid/main python-bioregistry 0.11.12-3 (diff) [7760 B] Fetched 6000 kB in 0s (148 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/python-bioregistry-J4ZzLR/python-bioregistry-0.11.12' with '<>' I: NOTICE: Log filtering will replace 'build/python-bioregistry-J4ZzLR' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 02 Oct 2026 16:22:23 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1183 B] Get:5 copy:/<>/apt_archive ./ Packages [1036 B] Fetched 2834 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-font-awesome fonts-font-awesome-legacy gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libelf1t64 libexpat1 libffi8 libfile-stripnondeterminism-perl libgfortran5 liblapack3 libmagic-mgc libmagic1t64 libncursesw6 libpipeline1 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 libtool libuchardet0 libunistring5 libuv1t64 libxml2-16 libyaml-0-2 m4 man-db media-types netbase openssl po-debconf pybuild-plugin-pyproject python3 python3-all python3-annotated-doc python3-annotated-types python3-anyio python3-autocommand python3-blinker python3-bs4 python3-build python3-certifi python3-click python3-curies python3-dateutil python3-defusedxml python3-dnspython python3-email-validator python3-fastapi python3-flask python3-flask-bootstrap python3-h11 python3-httpcore python3-httpx python3-idna python3-iniconfig python3-installer python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-linkify-it python3-markdown python3-markdown-it python3-markupsafe python3-mdurl python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pluggy python3-pydantic python3-pydantic-core python3-pygments python3-pyparsing python3-pyproject-hooks python3-pystow python3-pytest python3-pytz python3-rdflib python3-rdflib-endpoint python3-rich python3-setuptools python3-sortedcontainers python3-soupsieve python3-starlette python3-tabulate python3-tqdm python3-trie python3-typing-extensions python3-typing-inspection python3-uc-micro python3-uvicorn python3-uvloop python3-werkzeug python3-wheel python3-wsproto python3-wtforms python3-yaml python3-zipp python3.14 python3.14-minimal readline-common sensible-utils tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit node-fortawesome-fontawesome-free gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-blinker-doc python3-pip python-build-doc python3-aioquic python3-trio python-flask-doc python-flask-bootstrap-doc python-installer-doc python-jinja2-doc python-markdown-doc gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc python-setuptools-doc python-sortedcontainers-doc python3-databases python-trie-doc python-typing-extensions-doc python-uvicorn-doc ipython3 python-werkzeug-doc python3-lxml python3-watchdog python3-django python3-django-localflavor python3-sqlalchemy python3.14-venv python3.14-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx python3-requests libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl python3-chardet | python3-charset-normalizer python3-lxml python3-cryptography python3-h2 python3-asgiref python3-dotenv python3-babel python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-html5lib python3-tables python3-numba python3-html5rdf python3-networkx python3-orjson python3-httpx2 python3-opentelemetry-api python3-python-multipart python3-openssl python3-pyinotify The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-font-awesome fonts-font-awesome-legacy gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libelf1t64 libexpat1 libffi8 libfile-stripnondeterminism-perl libgfortran5 liblapack3 libmagic-mgc libmagic1t64 libncursesw6 libpipeline1 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libreadline8t64 libsqlite3-0 libtool libuchardet0 libunistring5 libuv1t64 libxml2-16 libyaml-0-2 m4 man-db media-types netbase openssl po-debconf pybuild-plugin-pyproject python3 python3-all python3-annotated-doc python3-annotated-types python3-anyio python3-autocommand python3-blinker python3-bs4 python3-build python3-certifi python3-click python3-curies python3-dateutil python3-defusedxml python3-dnspython python3-email-validator python3-fastapi python3-flask python3-flask-bootstrap python3-h11 python3-httpcore python3-httpx python3-idna python3-iniconfig python3-installer python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-linkify-it python3-markdown python3-markdown-it python3-markupsafe python3-mdurl python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pluggy python3-pydantic python3-pydantic-core python3-pygments python3-pyparsing python3-pyproject-hooks python3-pystow python3-pytest python3-pytz python3-rdflib python3-rdflib-endpoint python3-rich python3-setuptools python3-sortedcontainers python3-soupsieve python3-starlette python3-tabulate python3-tqdm python3-trie python3-typing-extensions python3-typing-inspection python3-uc-micro python3-uvicorn python3-uvloop python3-werkzeug python3-wheel python3-wsproto python3-wtforms python3-yaml python3-zipp python3.14 python3.14-minimal readline-common sbuild-build-depends-main-dummy sensible-utils tzdata 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 50.5 MB of archives. After this operation, 247 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1012 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.5-2 [132 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.8-1 [902 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.8-1 [2715 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 tzdata all 2026e-1 [262 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:11 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:17 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5 [137 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:21 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.4.6+ds-5 [5139 kB] Get:23 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:24 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:25 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260816 [134 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:28 http://deb.debian.org/debian sid/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:29 http://deb.debian.org/debian sid/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:31 http://deb.debian.org/debian sid/main amd64 groff-base amd64 1.24.2-2 [1365 kB] Get:32 http://deb.debian.org/debian sid/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:34 http://deb.debian.org/debian sid/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:35 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amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:47 http://deb.debian.org/debian sid/main amd64 dwz amd64 0.17-1 [109 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:50 http://deb.debian.org/debian sid/main amd64 gettext amd64 1.0-5 [2704 kB] Get:51 http://deb.debian.org/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:52 http://deb.debian.org/debian sid/main amd64 po-debconf all 1.0.22 [216 kB] Get:53 http://deb.debian.org/debian sid/main amd64 debhelper all 14.5 [944 kB] Get:54 http://deb.debian.org/debian sid/main amd64 dh-python all 7.20260623 [114 kB] Get:55 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome-legacy all 6-3 [1547 kB] Get:56 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3-pyproject-hooks all 1.2.0-2 [11.7 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-wheel all 0.47.0-2 [27.0 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-build all 1.5.1-1 [85.5 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-installer all 1.0.1+dfsg1-3 [19.7 kB] Get:64 http://deb.debian.org/debian sid/main amd64 pybuild-plugin-pyproject all 7.20260623 [6996 B] Get:65 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.14.7-3 [984 B] Get:66 http://deb.debian.org/debian sid/main amd64 python3-annotated-doc all 0.0.5-1 [8780 B] Get:67 http://deb.debian.org/debian sid/main amd64 python3-annotated-types all 0.8.0-1 [18.7 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.19-1 [45.2 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-anyio all 4.15.1-2 [87.7 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.9.0-2 [12.7 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.8.4-1 [38.7 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.15.0-1 [119 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:76 http://deb.debian.org/debian sid/main amd64 python3-click all 8.3.3-2 [107 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-dnspython all 2.8.0-6 [175 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-email-validator all 2.3.0-1 [33.1 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-pydantic-core amd64 2.46.5-2 [1610 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-typing-inspection all 0.4.4-1 [14.1 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-pydantic amd64 2.13.5-2 [389 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-sortedcontainers all 2.4.0-3 [31.3 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-trie all 0.4.0+ds-2 [7844 B] Get:84 http://deb.debian.org/debian sid/main amd64 python3-curies all 0.9.0-2 [38.4 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-uvloop amd64 0.22.1+ds1-4 [531 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-h11 all 0.16.0-2 [50.0 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-wsproto all 1.3.2-3 [23.1 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-uvicorn all 0.53.0-1 [62.5 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-starlette all 1.7.0-2 [55.7 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-fastapi all 0.141.1-2 [222 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-itsdangerous all 2.2.0-4 [17.5 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 3.0.3-2+b1 [13.7 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-4 [106 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-werkzeug all 3.1.9-1 [210 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-flask all 3.1.3-4 [106 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-wtforms all 3.2.1-2 [67.6 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-flask-bootstrap all 2.5.0+ds-1 [1118 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-httpcore all 1.0.9-1.1 [44.3 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-2 [9108 B] Get:103 http://deb.debian.org/debian sid/main amd64 python3-uc-micro all 2.0.0-1 [6028 B] Get:104 http://deb.debian.org/debian sid/main amd64 python3-linkify-it all 2.1.0-2 [18.7 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 4.2.0-4 [63.8 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-rich all 15.0.0-2 [210 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-httpx all 0.28.1-1.1 [75.1 kB] Get:108 http://deb.debian.org/debian sid/main amd64 python3-iniconfig all 2.1.0-2 [7540 B] Get:109 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:110 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 11.1.0-3 [74.7 kB] Get:111 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:112 http://deb.debian.org/debian sid/main amd64 python3-markdown all 3.10.3-1 [88.0 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2026.4-1 [34.5 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-5 [3919 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-5 [2929 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3-pluggy all 1.6.0-2 [27.2 kB] Get:117 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:118 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.70.1-1 [91.3 kB] Get:119 http://deb.debian.org/debian sid/main amd64 python3-pystow all 0.9.8-1 [46.6 kB] Get:120 http://deb.debian.org/debian sid/main amd64 python3-pytest all 9.1.1-1 [280 kB] Get:121 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 7.6.0-2 [512 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-rdflib-endpoint all 0.5.4-1 [15.6 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.23.0-2 [10.2 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 84.0.0-2 [560 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.10.0-1 [51.2 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Preconfiguring packages ... Fetched 50.5 MB in 0s (115 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11901 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.5-2_amd64.deb ... Unpacking libexpat1:amd64 (2.8.5-2) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.8-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.8-1_amd64.deb ... Unpacking python3.14-minimal (3.14.8-1) ... Setting up libpython3.14-minimal:amd64 (3.14.8-1) ... Setting up libexpat1:amd64 (2.8.5-2) ... Setting up python3.14-minimal (3.14.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12257 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... 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Unpacking python3-yaml (6.0.3-1+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../110-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up fonts-font-awesome-legacy (6-3) ... Setting up bsdextrautils (2.42.4-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libdebhelper-perl (14.5) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libuv1t64:amd64 (1.52.1-4) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up m4 (1.4.21-1) ... Setting up file (1:5.47-4) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up tzdata (2026e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 2 16:22:37 UTC 2026. Universal Time is now: Fri Oct 2 16:22:37 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1+nmu1) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.4.2-1) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5) ... Setting up autopoint (1.0-5) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up autoconf (2.73-2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up netbase (6.6) ... Setting up openssl (3.6.5-1) ... Setting up readline-common (8.3-4) ... Setting up fonts-font-awesome (7.3.0+dfsg-1) ... Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libreadline8t64:amd64 (8.3-4) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.2-2) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.14 (3.14.8-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up debhelper (14.5) ... Setting up python3 (3.14.7-3) ... Setting up python3-annotated-doc (0.0.5-1) ... Setting up python3-sortedcontainers (2.4.0-3) ... Setting up python3-zipp (3.23.0-2) ... Setting up python3-click (8.3.3-2) ... Setting up python3-autocommand (2.2.2-4) ... Setting up python3-markupsafe (3.0.3-2+b1) ... Setting up python3-annotated-types (0.8.0-1) ... Setting up python3-uc-micro (2.0.0-1) ... Setting up python3-jinja2 (3.1.6-4) ... Setting up python3-pygments (2.20.0+dfsg-2) ... Setting up python3-packaging (26.2-3) ... Setting up python3-pyproject-hooks (1.2.0-2) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-certifi (2026.7.22+ds-1) ... Setting up python3-werkzeug (3.1.9-1) ... Setting up python3-mdurl (0.1.2-2) ... Setting up python3-idna (3.19-1) ... Setting up python3-markdown (3.10.3-1) ... Setting up python3-h11 (0.16.0-2) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up python3-numpy (1:2.4.6+ds-5) ... Setting up python3-uvloop (0.22.1+ds1-4) ... Setting up python3-installer (1.0.1+dfsg1-3) ... Setting up python3-pluggy (1.6.0-2) ... Setting up python3-dnspython (2.8.0-6) ... Setting up python3-rdflib (7.6.0-2) ... Setting up python3-linkify-it (2.1.0-2) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-email-validator (2.3.0-1) ... Setting up python3-trie (0.4.0+ds-2) ... Setting up python3-soupsieve (2.8.4-1) ... Setting up python3-blinker (1.9.0-2) ... Setting up dh-python (7.20260623) ... Setting up python3-more-itertools (11.1.0-3) ... Setting up python3-httpcore (1.0.9-1.1) ... Setting up python3-iniconfig (2.1.0-2) ... Setting up python3-pydantic-core (2.46.5-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-wsproto (1.3.2-3) ... Setting up python3-typing-inspection (0.4.4-1) ... Setting up python3-jaraco.context (6.0.1-2) ... Setting up python3-anyio (4.15.1-2) ... Setting up python3-wtforms (3.2.1-2) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-pytest (9.1.1-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-5) ... Setting up python3-tqdm (4.70.1-1) ... Setting up python3-tabulate (0.10.0-1) ... Setting up python3-itsdangerous (2.2.0-4) ... Setting up python3-all (3.14.7-3) ... Setting up python3-yaml (6.0.3-1+b1) ... Setting up python3-pytz (2026.4-1) ... Setting up python3-starlette (1.7.0-2) ... Setting up python3-wheel (0.47.0-2) ... Setting up python3-bs4 (4.15.0-1) ... Setting up python3-pandas (2.3.3+dfsg-5) ... Setting up python3-pydantic (2.13.5-2) ... Setting up python3-markdown-it (4.2.0-4) ... Setting up python3-pystow (0.9.8-1) ... Setting up python3-build (1.5.1-1) ... Setting up python3-curies (0.9.0-2) ... Setting up python3-uvicorn (0.53.0-1) ... Setting up python3-setuptools (84.0.0-2) ... Setting up python3-rich (15.0.0-2) ... Setting up pybuild-plugin-pyproject (7.20260623) ... Setting up python3-flask (3.1.3-4) ... Setting up python3-flask-bootstrap (2.5.0+ds-1) ... Setting up python3-httpx (0.28.1-1.1) ... Setting up python3-fastapi (0.141.1-2) ... Setting up python3-rdflib-endpoint (0.5.4-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Fri, 02 Oct 2026 16:22:53 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Fri, 02 Oct 2026 16:22:53 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.111+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.111-1 (2026-09-28) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-6 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 linux-libc-dev_7.2.8-1 Package versions: apt_3.3.3 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47-6 binutils-common_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260816 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-python_7.20260623 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 fonts-font-awesome_7.3.0+dfsg-1 fonts-font-awesome-legacy_6-3 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-x86-64-linux-gnu_16.2.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.24.2-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libatomic1_16.2.0-3 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47-6 libblas3_3.12.1-8 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-6 libc-dev-bin_2.43-6 libc-gconv-modules-extra_2.43-6 libc6_2.43-6 libc6-dev_2.43-6 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libexpat1_2.8.5-2 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-3 libgcc-s1_16.2.0-3 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.2.0-3 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-3 libgprofng0_2.47-6 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-3 libisl23_0.28-1 libitm1_16.2.0-3 libjansson4_2.15.1-1 liblapack3_3.12.1-8 liblsan0_16.2.0-3 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3.1 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpython3-stdlib_3.14.7-3 libpython3.14-minimal_3.14.8-1 libpython3.14-stdlib_3.14.8-1 libquadmath0_16.2.0-3 libreadline8t64_8.3-4 libseccomp2_2.6.1-1+b1 libselinux1_3.11-2.1 libsframe3_2.47-6 libsmartcols1_2.42.4-1 libsqlite3-0_3.53.4-2 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 libsystemd0_262-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-3 libubsan1_16.2.0-3 libuchardet0_0.0.8-2+b2 libudev1_262-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libuv1t64_1.52.1-4 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libyaml-0-2_0.2.5-2+b1 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.8-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 media-types_14.0.0 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 netbase_6.6 openssl_3.6.5-1 openssl-provider-legacy_3.6.5-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 po-debconf_1.0.22 pybuild-plugin-pyproject_7.20260623 python3_3.14.7-3 python3-all_3.14.7-3 python3-annotated-doc_0.0.5-1 python3-annotated-types_0.8.0-1 python3-anyio_4.15.1-2 python3-autocommand_2.2.2-4 python3-blinker_1.9.0-2 python3-bs4_4.15.0-1 python3-build_1.5.1-1 python3-certifi_2026.7.22+ds-1 python3-click_8.3.3-2 python3-curies_0.9.0-2 python3-dateutil_2.9.0-5 python3-defusedxml_0.7.1-3 python3-dnspython_2.8.0-6 python3-email-validator_2.3.0-1 python3-fastapi_0.141.1-2 python3-flask_3.1.3-4 python3-flask-bootstrap_2.5.0+ds-1 python3-h11_0.16.0-2 python3-httpcore_1.0.9-1.1 python3-httpx_0.28.1-1.1 python3-idna_3.19-1 python3-iniconfig_2.1.0-2 python3-installer_1.0.1+dfsg1-3 python3-itsdangerous_2.2.0-4 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jinja2_3.1.6-4 python3-linkify-it_2.1.0-2 python3-markdown_3.10.3-1 python3-markdown-it_4.2.0-4 python3-markupsafe_3.0.3-2+b1 python3-mdurl_0.1.2-2 python3-minimal_3.14.7-3 python3-more-itertools_11.1.0-3 python3-numpy_1:2.4.6+ds-5 python3-numpy-dev_1:2.4.6+ds-5 python3-packaging_26.2-3 python3-pandas_2.3.3+dfsg-5 python3-pandas-lib_2.3.3+dfsg-5 python3-pluggy_1.6.0-2 python3-pydantic_2.13.5-2 python3-pydantic-core_2.46.5-2 python3-pygments_2.20.0+dfsg-2 python3-pyparsing_3.3.2-2 python3-pyproject-hooks_1.2.0-2 python3-pystow_0.9.8-1 python3-pytest_9.1.1-1 python3-pytz_2026.4-1 python3-rdflib_7.6.0-2 python3-rdflib-endpoint_0.5.4-1 python3-rich_15.0.0-2 python3-setuptools_84.0.0-2 python3-sortedcontainers_2.4.0-3 python3-soupsieve_2.8.4-1 python3-starlette_1.7.0-2 python3-tabulate_0.10.0-1 python3-tqdm_4.70.1-1 python3-trie_0.4.0+ds-2 python3-typing-extensions_4.16.0-5 python3-typing-inspection_0.4.4-1 python3-uc-micro_2.0.0-1 python3-uvicorn_0.53.0-1 python3-uvloop_0.22.1+ds1-4 python3-werkzeug_3.1.9-1 python3-wheel_0.47.0-2 python3-wsproto_1.3.2-3 python3-wtforms_3.2.1-2 python3-yaml_6.0.3-1+b1 python3-zipp_3.23.0-2 python3.14_3.14.8-1 python3.14-minimal_3.14.8-1 readline-common_8.3-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 tzdata_2026e-1 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 02 Oct 2026 16:22:53 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bioregistry Binary: python3-bioregistry Architecture: all Version: 0.11.12-3 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Detiste , Homepage: https://bioregistry.io/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/bioregistry Vcs-Git: https://salsa.debian.org/med-team/bioregistry.git Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4 , python3-click , python3-curies , python3-defusedxml , python3-fastapi , python3-flask-bootstrap , python3-httpx , python3-markdown , python3-more-itertools , python3-pandas , python3-pydantic , python3-pystow, python3-pytest , python3-rdflib , python3-rdflib-endpoint , python3-setuptools, python3-tabulate , python3-tqdm , python3-yaml Package-List: python3-bioregistry deb python optional arch=all Checksums-Sha1: 2a8f5269a839b037e7f0c321677b2271618c85ea 5989328 python-bioregistry_0.11.12.orig.tar.gz 63fdbd885eff7b5c299bee29a20c6b4bda945325 7760 python-bioregistry_0.11.12-3.debian.tar.xz Checksums-Sha256: e93b317d9e0e864c1f7719ca878890fd485e47e0af41e750e36a2c4ea7388c7c 5989328 python-bioregistry_0.11.12.orig.tar.gz fd8ba2d0ea805ef9fd8d8f39883673858909ec5af544ea1c66a22b3838e60ade 7760 python-bioregistry_0.11.12-3.debian.tar.xz Files: 1a4a59b870fcadb106a7391e7ddd2a6d 5989328 python-bioregistry_0.11.12.orig.tar.gz 5990ace29827a44c018ba01a315a8283 7760 python-bioregistry_0.11.12-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbhduARHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrIVw/7BSJnz4VHFoO7c/XAcSZq35O62lDZT9yD hjxON6zHautT+uBKnzys8Qe1hbvfxo5rx0PhCKdQbAfWt4ZFZ5m5agSoMDX7ZSRv fMqoC4iSaaeyW+MrIQwD+eP0G0MAI+fjGSOqN389tg/E+AAlvN0lAJKq+AnHgPhC RDkhJJlFPAyVbQiPQGJVc1zdzGpj+mOXaX56Qg9dwi26kKM7u7/mJjm0X6s/HJAZ RI4RcVJqKmaMhEsgUIhlt4FJNEN9gJ9OX4hOo8rbQxMB1wXoGSHBtWRkHMSt9HHC TgY8wOZS7zd72ywVbORoSXBzZdfNmrj+9hjNqGmC/3J0PenX0FA88Xhr2MILlw5f 4Y1QWgrUcfm4V3nj5QUOF1BBhrqSW+Y71lqFHdTauztTtAKW9WtrFkVJpRLszG6X 12r9ZL0t6bhdYMCUzaKM4f7endmwMaIUnjqPL0V5e/ofSkOwxN48aXscMnRA1pM4 IxkXqfapzjQJiOuS0Ia+bf8VLJC7yTrz47ysos1Io6n54Xx7ZEapl41lQjw/+Qbi d2vxIQPmQLNK+FVYCX5ZXVQ+fJK2gq3ZakvSJpUoP8gzhEs7QII17PgbBXtQvspS L4xU/kB4+142V2JoHDQvFBoQ6YD+sGfNs0eANILM8FdYXL8nvD1LMGnEVk7OErgs dnuAod/Dywg= =qhzq -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./python-bioregistry_0.11.12-3.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./python-bioregistry_0.11.12-3.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting python-bioregistry in /<> dpkg-source: info: unpacking python-bioregistry_0.11.12.orig.tar.gz dpkg-source: info: unpacking python-bioregistry_0.11.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying vendor_more_click.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=2 HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -b dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from /<>/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /<>/.pybuild/cpython3_3.14 * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/uri_format.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/__init__.py -> build/lib/bioregistry copying src/bioregistry/constants.py -> build/lib/bioregistry copying src/bioregistry/version.py -> build/lib/bioregistry creating build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/export copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export creating build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/health copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health creating build/lib/bioregistry/analysis copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/curation copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation creating build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data creating build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external creating build/lib/bioregistry/app copying src/bioregistry/app/api.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl creating build/lib/bioregistry/external/biocontext copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus creating build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing creating build/lib/bioregistry/external/zazuko copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko creating build/lib/bioregistry/external/edam copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam creating build/lib/bioregistry/external/rrid copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink creating build/lib/bioregistry/external/ncbi copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc creating build/lib/bioregistry/external/uniprot copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot creating build/lib/bioregistry/external/hl7 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go creating build/lib/bioregistry/external/miriam copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf creating build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal creating build/lib/bioregistry/external/wikidata copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/pathguide copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols creating build/lib/bioregistry/external/integbio copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio creating build/lib/bioregistry/external/lov copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO writing dependency_links to src/bioregistry.egg-info/dependency_links.txt writing entry points to src/bioregistry.egg-info/entry_points.txt writing requirements to src/bioregistry.egg-info/requires.txt writing top-level names to src/bioregistry.egg-info/top_level.txt writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Makefile' under directory 'docs' warning: no previously-included files matching '*.png' found under directory 'docs/img' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/_data' no previously-included directories found matching 'docs/source/api' no previously-included directories found matching 'exports' no previously-included directories found matching 'notebooks' no previously-included directories found matching 'tests/.pytest_cache' warning: no previously-included files found matching 'docs/*.md' warning: no previously-included files found matching 'docs/guides/*.md' warning: no previously-included files found matching 'docs/_config.yml' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.flake8' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching '.readthedocs.yml' warning: no previously-included files found matching 'tox.ini' warning: no previously-included files found matching '.pre-commit-config.yaml' warning: no previously-included files found matching 'Dockerfile' warning: no previously-included files found matching 'CITATION.cff' warning: no files found matching '*.rst' adding license file 'LICENSE' writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'bioregistry.app.static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.static' to be distributed and are already explicitly excluding 'bioregistry.app.static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'bioregistry.app.templates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates' to be distributed and are already explicitly excluding 'bioregistry.app.templates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'bioregistry.app.templates.highlights' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.highlights' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.highlights' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.highlights' to be distributed and are already explicitly excluding 'bioregistry.app.templates.highlights' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'bioregistry.app.templates.meta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.meta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.meta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.meta' to be distributed and are already explicitly excluding 'bioregistry.app.templates.meta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'bioregistry.app.templates.resolve_errors' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.resolve_errors' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.resolve_errors' to be distributed and are already explicitly excluding 'bioregistry.app.templates.resolve_errors' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/data/README.md -> build/lib/bioregistry/data copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates creating build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights creating build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta creating build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/summary.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/lint.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/compare.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/export copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema creating build/bdist.linux-x86_64/wheel/bioregistry/health copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/analysis copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis copying build/lib/bioregistry/pandas.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/curation copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/resolve.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh copying build/lib/bioregistry/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/py.typed -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/README.md -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl creating build/bdist.linux-x86_64/wheel/bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext creating build/bdist.linux-x86_64/wheel/bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus creating build/bdist.linux-x86_64/wheel/bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee creating build/bdist.linux-x86_64/wheel/bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data creating build/bdist.linux-x86_64/wheel/bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t creating build/bdist.linux-x86_64/wheel/bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing creating build/bdist.linux-x86_64/wheel/bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko creating build/bdist.linux-x86_64/wheel/bioregistry/external/edam copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam creating build/bdist.linux-x86_64/wheel/bioregistry/external/rrid copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/rrid creating build/bdist.linux-x86_64/wheel/bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink creating build/bdist.linux-x86_64/wheel/bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi creating build/bdist.linux-x86_64/wheel/bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc creating build/bdist.linux-x86_64/wheel/bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 creating build/bdist.linux-x86_64/wheel/bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/align.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam creating build/bdist.linux-x86_64/wheel/bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf creating build/bdist.linux-x86_64/wheel/bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal creating build/bdist.linux-x86_64/wheel/bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata creating build/bdist.linux-x86_64/wheel/bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry creating build/bdist.linux-x86_64/wheel/bioregistry/external/pathguide copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/pathguide copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external creating build/bdist.linux-x86_64/wheel/bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid creating build/bdist.linux-x86_64/wheel/bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct creating build/bdist.linux-x86_64/wheel/bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons creating build/bdist.linux-x86_64/wheel/bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols creating build/bdist.linux-x86_64/wheel/bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio creating build/bdist.linux-x86_64/wheel/bioregistry/external/lov copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov creating build/bdist.linux-x86_64/wheel/bioregistry/app copying build/lib/bioregistry/app/api.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app creating build/bdist.linux-x86_64/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-x86_64/wheel/./bioregistry/app/static copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/test.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app copying build/lib/bioregistry/version.py -> build/bdist.linux-x86_64/wheel/./bioregistry running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-x86_64/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/bioregistry-0.11.12.dist-info/WHEEL creating '/<>/.pybuild/cpython3_3.14/.tmp-43axetck/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' adding 'bioregistry/cli.py' adding 'bioregistry/collection_api.py' adding 'bioregistry/compare.py' adding 'bioregistry/constants.py' adding 'bioregistry/license_standardizer.py' adding 'bioregistry/lint.py' adding 'bioregistry/metaresource_api.py' adding 'bioregistry/pandas.py' adding 'bioregistry/parse_iri.py' adding 'bioregistry/parse_version_iri.py' adding 'bioregistry/py.typed' adding 'bioregistry/record_accumulator.py' adding 'bioregistry/resolve.py' adding 'bioregistry/resolve_identifier.py' adding 'bioregistry/resource_manager.py' adding 'bioregistry/schema_utils.py' adding 'bioregistry/summary.py' adding 'bioregistry/upload_ndex.py' adding 'bioregistry/uri_format.py' adding 'bioregistry/utils.py' adding 'bioregistry/version.py' adding 'bioregistry/analysis/__init__.py' adding 'bioregistry/analysis/bioregistry_diff.py' adding 'bioregistry/analysis/paper_ranking.py' adding 'bioregistry/analysis/paper_ranking_requirements.txt' adding 'bioregistry/app/__init__.py' adding 'bioregistry/app/api.py' adding 'bioregistry/app/cli.py' adding 'bioregistry/app/constants.py' adding 'bioregistry/app/impl.py' adding 'bioregistry/app/proxies.py' adding 'bioregistry/app/test.py' adding 'bioregistry/app/ui.py' adding 'bioregistry/app/utils.py' adding 'bioregistry/app/wsgi.py' adding 'bioregistry/app/static/logo.svg' adding 'bioregistry/app/templates/base.html' adding 'bioregistry/app/templates/collection.html' adding 'bioregistry/app/templates/collections.html' adding 'bioregistry/app/templates/context.html' adding 'bioregistry/app/templates/contexts.html' adding 'bioregistry/app/templates/contributor.html' adding 'bioregistry/app/templates/contributors.html' adding 'bioregistry/app/templates/home.html' adding 'bioregistry/app/templates/macros.html' adding 'bioregistry/app/templates/metaresource.html' adding 'bioregistry/app/templates/metaresources.html' adding 'bioregistry/app/templates/prose.html' adding 'bioregistry/app/templates/reference.html' adding 'bioregistry/app/templates/resource.html' adding 'bioregistry/app/templates/resources.html' adding 'bioregistry/app/templates/highlights/keywords.html' adding 'bioregistry/app/templates/highlights/owners.html' adding 'bioregistry/app/templates/highlights/relations.html' adding 'bioregistry/app/templates/highlights/twitter.html' adding 'bioregistry/app/templates/meta/access.html' adding 'bioregistry/app/templates/meta/acknowledgements.html' adding 'bioregistry/app/templates/meta/download.html' adding 'bioregistry/app/templates/meta/related.html' adding 'bioregistry/app/templates/meta/schema.html' adding 'bioregistry/app/templates/meta/summary.html' adding 'bioregistry/app/templates/meta/sustainability.html' adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' adding 'bioregistry/benchmarks/__init__.py' adding 'bioregistry/benchmarks/__main__.py' adding 'bioregistry/benchmarks/cli.py' adding 'bioregistry/benchmarks/curie_parsing.py' adding 'bioregistry/benchmarks/curie_validation.py' adding 'bioregistry/benchmarks/uri_parsing.py' adding 'bioregistry/curation/__init__.py' adding 'bioregistry/curation/add_co_providers.py' adding 'bioregistry/curation/add_descriptions_from_gs.py' adding 'bioregistry/curation/add_examples.py' adding 'bioregistry/curation/add_examples_from_javert.py' adding 'bioregistry/curation/add_examples_from_ols.py' adding 'bioregistry/curation/add_ontology_regexes.py' adding 'bioregistry/curation/bulk_import.py' adding 'bioregistry/curation/clean_licenses.py' adding 'bioregistry/curation/clean_name_suffixes.py' adding 'bioregistry/curation/clean_publications.py' adding 'bioregistry/curation/cleanup_authors.py' adding 'bioregistry/curation/curated_papers.csv' adding 'bioregistry/curation/deprecation_diff.py' adding 'bioregistry/curation/enrich_publications.py' adding 'bioregistry/curation/fix_obo_purls.py' adding 'bioregistry/curation/import_pc_semiautomatic.py' adding 'bioregistry/curation/make_description_curation_sheet.py' adding 'bioregistry/curation/make_health_report_curation_sheet.py' adding 'bioregistry/curation/map_bartoc_via_wikidata.py' adding 'bioregistry/curation/map_re3data_via_fairsharing.py' adding 'bioregistry/curation/rename_metaprefix.py' adding 'bioregistry/curation/review_pc.py' adding 'bioregistry/curation/suggest_author_curation.py' adding 'bioregistry/curation/suggest_uniprot_providers.py' adding 'bioregistry/data/README.md' adding 'bioregistry/data/__init__.py' adding 'bioregistry/data/bioregistry.json' adding 'bioregistry/data/collections.json' adding 'bioregistry/data/contexts.json' adding 'bioregistry/data/metaregistry.json' adding 'bioregistry/data/mismatch.json' adding 'bioregistry/export/__init__.py' adding 'bioregistry/export/__main__.py' adding 'bioregistry/export/cli.py' adding 'bioregistry/export/prefix_maps.py' adding 'bioregistry/export/prefixcc.py' adding 'bioregistry/export/rdf_export.py' adding 'bioregistry/export/schema_export.py' adding 'bioregistry/export/sssom_export.py' adding 'bioregistry/export/tables_export.py' adding 'bioregistry/export/tsv_export.py' adding 'bioregistry/export/warnings_export.py' adding 'bioregistry/export/yaml_export.py' adding 'bioregistry/external/__init__.py' adding 'bioregistry/external/align.py' adding 'bioregistry/external/alignment_utils.py' adding 'bioregistry/external/aberowl/__init__.py' adding 'bioregistry/external/aberowl/processed.json' adding 'bioregistry/external/bartoc/__init__.py' adding 'bioregistry/external/bartoc/processed.json' adding 'bioregistry/external/biocontext/__init__.py' adding 'bioregistry/external/biocontext/processed.json' adding 'bioregistry/external/biolink/__init__.py' adding 'bioregistry/external/biolink/processed.json' adding 'bioregistry/external/biolink/processing_biolink.json' adding 'bioregistry/external/bioportal/__init__.py' adding 'bioregistry/external/bioportal/agroportal.json' adding 'bioregistry/external/bioportal/agroportal.py' adding 'bioregistry/external/bioportal/bioportal.json' adding 'bioregistry/external/bioportal/bioportal.py' adding 'bioregistry/external/bioportal/ecoportal.json' adding 'bioregistry/external/bioportal/ecoportal.py' adding 'bioregistry/external/cellosaurus/__init__.py' adding 'bioregistry/external/cellosaurus/processed.json' adding 'bioregistry/external/cheminf/__init__.py' adding 'bioregistry/external/cheminf/processed.json' adding 'bioregistry/external/cropoct/__init__.py' adding 'bioregistry/external/cropoct/processed.json' adding 'bioregistry/external/edam/__init__.py' adding 'bioregistry/external/edam/processed.json' adding 'bioregistry/external/fairsharing/__init__.py' adding 'bioregistry/external/fairsharing/processed.json' adding 'bioregistry/external/go/__init__.py' adding 'bioregistry/external/go/processed.json' adding 'bioregistry/external/go/processing_go.json' adding 'bioregistry/external/hl7/OID_Report.csv' adding 'bioregistry/external/hl7/__init__.py' adding 'bioregistry/external/integbio/__init__.py' adding 'bioregistry/external/integbio/processed.json' adding 'bioregistry/external/lov/__init__.py' adding 'bioregistry/external/lov/processed.json' adding 'bioregistry/external/miriam/__init__.py' adding 'bioregistry/external/miriam/processed.json' adding 'bioregistry/external/n2t/__init__.py' adding 'bioregistry/external/n2t/processed.json' adding 'bioregistry/external/ncbi/__init__.py' adding 'bioregistry/external/ncbi/processed.json' adding 'bioregistry/external/obofoundry/__init__.py' adding 'bioregistry/external/obofoundry/processed.json' adding 'bioregistry/external/ols/__init__.py' adding 'bioregistry/external/ols/processed.json' adding 'bioregistry/external/ols/processing_ols.json' adding 'bioregistry/external/ontobee/__init__.py' adding 'bioregistry/external/ontobee/processed.json' adding 'bioregistry/external/pathguide/__init__.py' adding 'bioregistry/external/prefixcommons/__init__.py' adding 'bioregistry/external/prefixcommons/processed.json' adding 'bioregistry/external/re3data/__init__.py' adding 'bioregistry/external/re3data/processed.json' adding 'bioregistry/external/rrid/__init__.py' adding 'bioregistry/external/togoid/__init__.py' adding 'bioregistry/external/togoid/processed.json' adding 'bioregistry/external/uniprot/__init__.py' adding 'bioregistry/external/uniprot/processed.json' adding 'bioregistry/external/wikidata/__init__.py' adding 'bioregistry/external/wikidata/processed.json' adding 'bioregistry/external/zazuko/__init__.py' adding 'bioregistry/external/zazuko/processed.json' adding 'bioregistry/gh/__init__.py' adding 'bioregistry/gh/github_client.py' adding 'bioregistry/gh/new_prefix.py' adding 'bioregistry/health/__init__.py' adding 'bioregistry/health/__main__.py' adding 'bioregistry/health/check_homepages.py' adding 'bioregistry/health/check_providers.py' adding 'bioregistry/health/cli.py' adding 'bioregistry/schema/__init__.py' adding 'bioregistry/schema/constants.py' adding 'bioregistry/schema/schema.json' adding 'bioregistry/schema/struct.py' adding 'bioregistry/schema/utils.py' adding 'bioregistry-0.11.12.dist-info/licenses/LICENSE' adding 'bioregistry-0.11.12.dist-info/METADATA' adding 'bioregistry-0.11.12.dist-info/WHEEL' adding 'bioregistry-0.11.12.dist-info/entry_points.txt' adding 'bioregistry-0.11.12.dist-info/top_level.txt' adding 'bioregistry-0.11.12.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built bioregistry-0.11.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:385: cd /<>/.pybuild/cpython3_3.14/build; python3.14 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' ============================= test session starts ============================== platform linux -- Python 3.14.8, pytest-9.1.1, pluggy-1.6.0 rootdir: /<>/.pybuild/cpython3_3.14/build configfile: pyproject.toml plugins: anyio-4.15.1 collected 1 item / 19 errors / 1 deselected / 0 selected ==================================== ERRORS ==================================== __________________ ERROR collecting tests/test_acquisition.py __________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_acquisition.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_acquisition.py:7: in from bioregistry.external.obofoundry import get_obofoundry_example bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ______________________ ERROR collecting tests/test_api.py ______________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_api.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_api.py:5: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' __________________ ERROR collecting tests/test_collections.py __________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_collections.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_collections.py:11: in from bioregistry import manager bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ___________________ ERROR collecting tests/test_contexts.py ____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_contexts.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_contexts.py:8: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' _____________________ ERROR collecting tests/test_data.py ______________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_data.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_data.py:15: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ___________________ ERROR collecting tests/test_data_slow.py ___________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_data_slow.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_data_slow.py:8: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' __________________ ERROR collecting tests/test_duplicates.py ___________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_duplicates.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_duplicates.py:9: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ________________ ERROR collecting tests/test_identifiers_org.py ________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_identifiers_org.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_identifiers_org.py:8: in import requests E ModuleNotFoundError: No module named 'requests' _____________________ ERROR collecting tests/test_indra.py _____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_indra.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_indra.py:7: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ____________________ ERROR collecting tests/test_manager.py ____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_manager.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_manager.py:7: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' _________________ ERROR collecting tests/test_metaregistry.py __________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_metaregistry.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_metaregistry.py:9: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' __________________ ERROR collecting tests/test_obofoundry.py ___________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_obofoundry.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_obofoundry.py:7: in from bioregistry import get_obofoundry_prefix bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ______________________ ERROR collecting tests/test_ols.py ______________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_ols.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_ols.py:8: in from bioregistry.external.ols import OLS_PROCESSING, VersionType bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ____________________ ERROR collecting tests/test_pandas.py _____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_pandas.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_pandas.py:7: in import bioregistry.pandas as brpd bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ____________________ ERROR collecting tests/test_resolve.py ____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_resolve.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_resolve.py:8: in import bioregistry bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' ____________________ ERROR collecting tests/test_sparql.py _____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_sparql.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_sparql.py:7: in import requests E ModuleNotFoundError: No module named 'requests' _____________________ ERROR collecting tests/test_utils.py _____________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_utils.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_utils.py:5: in from bioregistry.utils import backfill, deduplicate bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' _________________ ERROR collecting tests/test_web/test_api.py __________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_web/test_api.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_web/test_api.py:15: in from bioregistry import Resource bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' __________________ ERROR collecting tests/test_web/test_ui.py __________________ ImportError while importing test module '/<>/.pybuild/cpython3_3.14/build/tests/test_web/test_ui.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.14/importlib/__init__.py:88: in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ tests/test_web/test_ui.py:11: in from bioregistry import Collection bioregistry/__init__.py:5: in from .collection_api import get_collection, get_context # noqa:F401 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ bioregistry/collection_api.py:7: in from .resource_manager import manager bioregistry/resource_manager.py:43: in from .schema import ( bioregistry/schema/__init__.py:5: in from .struct import ( # noqa:F401 bioregistry/schema/struct.py:42: in from bioregistry.utils import curie_to_str, deduplicate, removeprefix, removesuffix bioregistry/utils.py:22: in import requests E ModuleNotFoundError: No module named 'requests' =============================== warnings summary =============================== tests/test_web/test_api.py:13 /<>/.pybuild/cpython3_3.14/build/tests/test_web/test_api.py:13: StarletteDeprecationWarning: Using `httpx` with `starlette.testclient` is deprecated; install `httpx2` instead. from starlette.testclient import TestClient -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ ERROR tests/test_acquisition.py ERROR tests/test_api.py ERROR tests/test_collections.py ERROR tests/test_contexts.py ERROR tests/test_data.py ERROR tests/test_data_slow.py ERROR tests/test_duplicates.py ERROR tests/test_identifiers_org.py ERROR tests/test_indra.py ERROR tests/test_manager.py ERROR tests/test_metaregistry.py ERROR tests/test_obofoundry.py ERROR tests/test_ols.py ERROR tests/test_pandas.py ERROR tests/test_resolve.py ERROR tests/test_sparql.py ERROR tests/test_utils.py ERROR tests/test_web/test_api.py ERROR tests/test_web/test_ui.py !!!!!!!!!!!!!!!!!!! Interrupted: 19 errors during collection !!!!!!!!!!!!!!!!!!! ================= 1 deselected, 1 warning, 19 errors in 1.27s ================== E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=2: cd /<>/.pybuild/cpython3_3.14/build; python3.14 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.14 --parallel=2 returned exit code 13 make: *** [debian/rules:12: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- Build finished at 2026-10-02T16:22:58Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Fri, 02 Oct 2026 16:22:59 +0000 | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Fri, 02 Oct 2026 16:23:00 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 68720 Build-Time: 4 Distribution: sid-unshare Fail-Stage: build Host Architecture: amd64 Install-Time: 30 Job: python-bioregistry_0.11.12-3 Machine Architecture: amd64 Package: python-bioregistry Package-Time: 42 Source-Version: 0.11.12-3 Space: 68720 Status: attempted Version: 0.11.12-3 -------------------------------------------------------------------------------- Finished at 2026-10-02T16:22:58Z Build needed 00:00:42, 68720k disk space