Package: apt-moreutils Version: 2.2~nmu2 Architecture: all Maintainer: Jean-Christophe Dubacq Installed-Size: 46 Depends: python, python-apt (>= 0.8.8~), python-xdg Homepage: https://github.com/jcdubacq/apt-moreutils Priority: optional Section: misc Filename: pool/main/a/apt-moreutils/apt-moreutils_2.2~nmu2_all.deb Size: 12738 SHA256: 399acb2bc1ca4b6222c9f31d1edcf15669ef6685c6bf349bc53f4d66b8d8c3b3 SHA1: 724bcef9eb3c0bc03de0b2a08e5e4f7a3770f22e MD5sum: f72fe09ec63a65508fe8749dc2372c7b Description: Miscellaneous utilities for package management apt-origins checks in the apt sources where a package is downloadable from, and assigns each package to an origin. It can then display how many packages come from each source and which ones. . apt-tree gives a somewhat robust state of your installed packages, to be able to replicate the same packages on another computer. . apt-missing shows missing dependencies (or recommends, or else) of installed packages. Package: datapol-backuppc Source: vdanjean-backuppc-client Version: 2.0.3 Architecture: all Maintainer: Vincent Danjean Installed-Size: 29 Depends: adduser, sudo (>= 1.7.2p1-1), rsync, openssh-server | ssh-server Breaks: memo-backuppc (<< 2) Replaces: memo-backuppc (<< 2) Priority: extra Section: utils Filename: pool/main/v/vdanjean-backuppc-client/datapol-backuppc_2.0.3_all.deb Size: 5584 SHA256: 8b4cc5c936029fd5daa961ef01e9aff1639dcba97a6abde483d74fe92290c801 SHA1: 1e105fa5b4db54566382327b72a19482faa22d7a MD5sum: 733d8cd574f45c1f854558befe44a473 Description: setup ssh keys to allow access from datapol backuppc server THIS PACKAGE GIVE DATAPOL ADMINS ROOT ACCESS ON YOUR MACHINE . This package is for private use by the Datamove/Polaris research teams. You can be interested by the source but probably not by the binary. . This package allows backuppc server for Datamove/Polaris to access the computer to save and restore files. Package: decova Version: 1.4.4-1 Architecture: all Maintainer: Debian Perl Group Installed-Size: 321 Depends: perl, r-base, bedtools Recommends: picard-tools, samtools Homepage: https://metacpan.org/release/DeCovA Priority: optional Section: perl Filename: pool/main/d/decova/decova_1.4.4-1_all.deb Size: 47060 SHA256: e1feeea74018dcbd1ab25b14787e2dadce3874a47182efc4ae93ab8d34284339 SHA1: 24ee9443e3b5a9621e820573faa885c90cf438cf MD5sum: 10e45dce0b112bfb57d09f8e7c7f5196 Description: depth and coverage analysis and CNV detection for NGS data DeCovA allows the user to study and vizualize the depth and coverage of Next Generation Sequencing data, especially for panels of genes used for the diagnosis of genetic diseases. DeCovA also includes a module to detect copy number variants (CNV) Package: golang-guestfs-dev Source: libguestfs Version: 1:1.32.7-1~bpo8+1 Architecture: all Maintainer: Debian Libvirt Maintainers Installed-Size: 1375 Depends: libguestfs-dev Homepage: http://libguestfs.org Priority: extra Section: devel Filename: pool/main/libg/libguestfs/golang-guestfs-dev_1.32.7-1~bpo8+1_all.deb Size: 965084 SHA256: 57acada082be5ce4f8aae0a85e8bca99eae50ca8b6ff15e8d0810ccf03913428 SHA1: 01fbe5ea62afed9d0bc7a753c907ca1123efd892 MD5sum: 18d1a96172a5a5e455ec1e81268a8472 Description: guest disk image management system - Golang bindings The libguestfs library allows accessing and modifying guest disk images. . This package contains source for the Golang bindings. Package: htslib-test Source: htslib Version: 1.3.1-1~bpo8+1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 4180 Depends: perl Homepage: https://github.com/samtools/htslib Priority: optional Section: science Filename: pool/main/h/htslib/htslib-test_1.3.1-1~bpo8+1_all.deb Size: 541970 SHA256: 89eaa484d3c2a65f4218b6b3ff8ef9fe28516c9cb66fef6da5de95e3cf46a008 SHA1: 6859a47faadfc5ecaf933cd8135e2bd21d6afe20 MD5sum: 235bb571c18167415039e985724bc871 Description: Test data for HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains test files and scripts for the HTSlib. Package: libhtsjdk-java Source: htsjdk Version: 2.7.0+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 1564 Depends: libcommons-compress-java, libcommons-jexl2-java, libcommons-logging-java, libngs-java, libsnappy-java, libxz-java Suggests: picard-tools, python Homepage: http://samtools.github.io/htsjdk/ Priority: optional Section: java Filename: pool/main/h/htsjdk/libhtsjdk-java_2.7.0+dfsg-2_all.deb Size: 1423616 SHA256: 096228d7ff1bcd4291a7a6ddc5b2eadc60c48f2c00a8a1d2e7384755f709e902 SHA1: 031ed5d44c66e8615955ea9ef5b4482f51071027 MD5sum: e9e3fc489f9fa12f09b903d819e07e29 Description: Java API for high-throughput sequencing data (HTS) formats HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM (Sequence Alignment/Map) and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data. Package: libhtsjdk-java-doc Source: htsjdk Version: 2.7.0+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 17238 Homepage: http://samtools.github.io/htsjdk/ Priority: optional Section: doc Filename: pool/main/h/htsjdk/libhtsjdk-java-doc_2.7.0+dfsg-2_all.deb Size: 672506 SHA256: 79ef5aa175b35db02c4f781dd409fd71cfa264ad9d93d173af370cf3863e5e67 SHA1: 72b25a44dd6ece563f97a81514dc9fbce4dac69c MD5sum: 6d95a8dd97f2a6a194a3215cc4ff955c Description: Documentation for the java HTSJDK library HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM (Sequence Alignment/Map) and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data. . This package contains the javadoc of the library. Package: libownet-perl Source: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 93 Depends: perl Homepage: http://owfs.org/ Priority: extra Section: perl Filename: pool/main/o/owfs/libownet-perl_3.1p1-3~bpo8+1_all.deb Size: 29220 SHA256: 41b02551b682714b049935deaacea60f80d907fc90753d434f5424cd39dee306 SHA1: 283f23611eea6043d14afa9554c8b442f2431a3d MD5sum: 74a38400782f534c1ab3a86331a82f49 Description: Perl module for accessing 1-wire networks The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . OWNet.pm is a perl module for accessing 1-wire sensors through an owserver. Package: libownet-php Source: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 89 Depends: php5 | php5-cli Homepage: http://owfs.org/ Priority: extra Section: web Filename: pool/main/o/owfs/libownet-php_3.1p1-3~bpo8+1_all.deb Size: 16896 SHA256: 21dfd92c234e988c3ebb800fd71f1bd1911ee1c16b17ed4768fb341ff9e8070e SHA1: e911e23bb76918120cd8c783a48b3aa9065ee684 MD5sum: 5733ea02d86ca13c5c0624fbf4ac6ebc Description: Dallas 1-wire support: PHP OWNet library The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . The PHP OWNet library lets you access owserver and allows reading, writing and listing the 1-wire bus. Package: libpicard-java Source: picard-tools Version: 2.7.1+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 1229 Depends: libguava-java (>= 15.0), libhtsjdk-java (>= 2.7~), libhtsjdk-java (<< 2.8~) Recommends: r-base-core Suggests: picard-tools Breaks: picard-tools (<< 1.114) Replaces: picard-tools (<< 1.114) Homepage: http://broadinstitute.github.io/picard/ Priority: optional Section: java Filename: pool/main/p/picard-tools/libpicard-java_2.7.1+dfsg-2_all.deb Size: 1149826 SHA256: f4f1ae990a7484f2faeeba4e9f51302c19ced79096adda16c87b74fbfaf6de71 SHA1: bcd43faffc9df9aa57aee9232fb1ca759cddf3c0 MD5sum: 49dc152c2c170185cccad7d2e8bcf821 Description: Java library to manipulate SAM and BAM files SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. This library provides classes to manipulate SAM and BAM files. . A command line wrapper for this library is provided in the picard-tools package. Package: libpicard-java-doc Source: picard-tools Version: 2.7.1+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 10818 Homepage: http://broadinstitute.github.io/picard/ Priority: optional Section: doc Filename: pool/main/p/picard-tools/libpicard-java-doc_2.7.1+dfsg-2_all.deb Size: 405542 SHA256: b5b6c5ef451e2ddc4c3c8d1feebdda55d7bda66d018612b6447f6c027f9ad33c SHA1: aba13bad135a6047cb65141dd5af43b4d4455044 MD5sum: 348de67e833c4d0941c7972161a198c6 Description: Documentation for the java picard library SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. The picard java library provides classes to manipulate SAM and BAM files. . This package contains the javadoc of the picard java library. Package: libsnappy-java Source: snappy-java Version: 1.1.1.7-2~bpo8+1 Architecture: all Maintainer: Debian Java Maintainers Installed-Size: 130 Depends: libsnappy-jni Homepage: https://github.com/xerial/snappy-java Priority: optional Section: java Filename: pool/main/s/snappy-java/libsnappy-java_1.1.1.7-2~bpo8+1_all.deb Size: 64646 SHA256: f9043a867bc1b3d4027d45f7706450a1f85fed036b4485227a9519452c9baf70 SHA1: 79317bcd001b4cfef42082d1460e49d5857ae1f0 MD5sum: 58a87c3e17074386d7ae4d86b90c7c81 Description: Snappy for Java, a fast compressor/decompresser Java port of Snappy, a fast compresser/decompresser written in C++, originally developed by Google. . Snappy's main target is very high-speed compression/decompression with reasonable compression size. So the compression ratio of snappy-java is modest and about the same as LZF (ranging 20%-100% according to the dataset). Package: libstatistics-descriptive-discrete-perl Version: 0.07-1~bpo8+1 Architecture: all Maintainer: Debian Perl Group Installed-Size: 84 Depends: perl Homepage: https://metacpan.org/release/Statistics-Descriptive-Discrete Priority: optional Section: perl Filename: pool/main/libs/libstatistics-descriptive-discrete-perl/libstatistics-descriptive-discrete-perl_0.07-1~bpo8+1_all.deb Size: 11902 SHA256: 8e3c6f53a7230927d172a5bbb092a3d73afa6e4b328363b343968030f242b872 SHA1: 37e9d6decb32a0d8112243ae0eed5efbd8732115 MD5sum: c46474decc89bd0cd78cf5083603b784 Description: Compute descriptive statistics for discrete data sets. Statistics::Descriptive::Discrete provides basic functions used in descriptive statistics. It borrows very heavily from Statistics::Descriptive::Full (which is included with Statistics::Descriptive) with one major difference. This module is optimized for discretized data e.g. data from an A/D conversion that has a discrete set of possible values. E.g. if your data is produced by an 8 bit A/D then you'd have only 256 possible values in your data set. Even though you might have a million data points, you'd only have 256 different values in those million points. Instead of storing the entire data set as Statistics::Descriptive does, this module only stores the values it's seen and the number of times it's seen each value. . For very large data sets, this storage method results in significant speed and memory improvements. In a test case with 2.6 million data points from a real world application, Statistics::Descriptive::Discrete took 40 seconds to calculate a set of statistics instead of the 561 seconds required by Statistics::Descriptive::Full. It also required only 4MB of RAM instead of the 400MB used by Statistics::Descriptive::Full for the same data set. Package: libtaktuk-perl Source: taktuk Version: 3.7.7-1~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 79 Depends: perl Recommends: taktuk (>= 3.7.3) Homepage: http://taktuk.gforge.inria.fr/ Priority: optional Section: perl Filename: pool/main/t/taktuk/libtaktuk-perl_3.7.7-1~bpo8+1_all.deb Size: 27092 SHA256: 4dea5fa74844973a220da463aefc6d308de0e016100a679ab3a781d30db758c8 SHA1: 0cd74eae56557b93acbbe7c81ce8aae692722599 MD5sum: c3272172414b6403352af5ad29014433 Description: Perl bindings for taktuk TakTuk allows one to execute commands in parallel on a potentially large set of remote nodes (using ssh to connect to each node). It is typically used inside high performance computing clusters and grids. It uses an adaptive algorithm to efficiently distribute the work and sets up an interconnection network to transport commands and perform I/Os multiplexing. It doesn't require any specific software on the nodes thanks to a self-propagation algorithm. . This package provides perl bindings to the TakTuk API. It also provides TakTuk::Pilot, a perl module that allows one to manage a TakTuk instance from a perl program. Package: memo-backuppc Source: vdanjean-backuppc-client Version: 2.0.3 Architecture: all Maintainer: Vincent Danjean Installed-Size: 16 Depends: datapol-backuppc Priority: extra Section: oldlibs Filename: pool/main/v/vdanjean-backuppc-client/memo-backuppc_2.0.3_all.deb Size: 3636 SHA256: ecb87b64e951be305272ae669f94c42a05ba9cbbce9adfb322a0f8b911b57cda SHA1: 1f78bf9202d75b7ec026a40fea68edc7b0084623 MD5sum: 714a64c3b31e6ba531ae9f737a2961e4 Description: transitional dummy package This is a transitional dummy package. It can safely be removed. Package: oar-doc Source: oar Version: 2.5.7-2~bpo8+1 Architecture: all Maintainer: Pierre Neyron Installed-Size: 6342 Depends: libjs-jquery, libjs-underscore Homepage: http://oar.imag.fr/ Priority: extra Section: doc Filename: pool/main/o/oar/oar-doc_2.5.7-2~bpo8+1_all.deb Size: 2831788 SHA256: f82288cb8417ac73dd95eea539a28a8eb5d847b6a5064f94aa107754d7e02126 SHA1: 9d068159bf214fd611cf32ecdece3a119ed2d499 MD5sum: 16061de770e1d551066b48c771e7fa96 Description: OAR batch scheduler documentation package OAR is a versatile resource and task manager (also called a batch scheduler) for clusters and other computing infrastructures . This package install some documentation for OAR batch scheduler Package: oar-web-status Source: oar Version: 2.5.7-2~bpo8+1 Architecture: all Maintainer: Pierre Neyron Installed-Size: 280 Depends: apache2 | httpd-cgi, perl, libdbi-perl, libdbd-mysql-perl | libdbd-pg-perl, libtie-ixhash-perl, libappconfig-perl, libsort-naturally-perl, php5, php5-mysql | php5-pgsql Suggests: oar-doc Homepage: http://oar.imag.fr/ Priority: extra Section: web Filename: pool/main/o/oar/oar-web-status_2.5.7-2~bpo8+1_all.deb Size: 55966 SHA256: 9b9a006b705cb7976ef8674fe30af06e2784cffe7cbe8f8d8c38280ba020f304 SHA1: f89c9c7429069f048e136d6329188e8d2ba3f91a MD5sum: 815da52db84fbb261d26323d01816193 Description: OAR batch scheduler visualization tool package OAR is a versatile resource and task manager (also called a batch scheduler) for clusters and other computing infrastructures . This package install the OAR batch scheduler web interfaces: drawgantt-svg and monika. Package: ow-tools Source: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 133 Depends: tk Suggests: owserver Breaks: ow-shell (<< 2.9p5) Replaces: ow-shell (<< 2.9p5) Homepage: http://owfs.org/ Priority: extra Section: electronics Filename: pool/main/o/owfs/ow-tools_3.1p1-3~bpo8+1_all.deb Size: 27674 SHA256: e433cacd534ab6ec01955613f0184ca584c8b224f0a4ee9911234b3665a9ab40 SHA1: ad521e77a9a631fba204f93c0578f6e46d91e1f1 MD5sum: 01bea7c67bd806dd4712171ff2a7f3f6 Description: tools to monitor or inspect a ow-server link The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . This package includes two TclTk tools: * owtap: inspect network transmission of the owserver protocol * owmon: show statistics and setting for an owserver Package: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 41 Depends: owfs-fuse (>= 3.1p1-3~bpo8+1), owserver (>= 3.1p1-3~bpo8+1), owhttpd (>= 3.1p1-3~bpo8+1), owftpd (>= 3.1p1-3~bpo8+1) Suggests: owfs-doc Homepage: http://owfs.org/ Priority: extra Section: electronics Filename: pool/main/o/owfs/owfs_3.1p1-3~bpo8+1_all.deb Size: 8212 SHA256: 8a985ce449ffb5964c97d2327e386aa5ff2669d62bf4291949e25117c81445a1 SHA1: fdc01dbc63b2a765187fe64c5a1dda172ead3848 MD5sum: 7cfe81ca29f596cce59f0184e4095f5e Description: Dallas 1-wire support The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . This package is a metapackage depending on various other OWFS packages. Installing this package gets you a FUSE daemon, server arbitrates access to the bus from multiple client processes, small ftp and webserver. Package: owfs-common Source: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 73 Depends: ucf Multi-Arch: foreign Homepage: http://owfs.org/ Priority: extra Section: electronics Filename: pool/main/o/owfs/owfs-common_3.1p1-3~bpo8+1_all.deb Size: 16348 SHA256: d0ba83d41ad0894880c07627d0517b8e88aaa80f1adc4f2a66df0091cf7920d4 SHA1: d043d49459657181de9c84f770861bf6b68b4179 MD5sum: 5426cd73d7ba1c98c7db218fc9054f45 Description: common files used by any of the OWFS programs The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . This package contains the common files that are used by any of the OWFS programs. Package: owfs-doc Source: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 233 Suggests: owfs Homepage: http://owfs.org/ Priority: extra Section: doc Filename: pool/main/o/owfs/owfs-doc_3.1p1-3~bpo8+1_all.deb Size: 195038 SHA256: 0104a5bda225026645a11cde003202ba42c512041597421ca1ad30da3df8356a SHA1: 3fb33c77b6efdfe46b9a23c19991d008db393b45 MD5sum: 4ebc9f6183341506082c024d9b536d7a Description: Dallas 1-wire support: Documentation for owfs The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . Documentation for OWFS in 'man' format. This package contains the manpages for 1-Wire, including the device-specific manpages. Package: picard-tools Version: 2.7.1+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: default-jre | java6-runtime, libpicard-java (= 2.7.1+dfsg-2) Homepage: http://broadinstitute.github.io/picard/ Priority: optional Section: science Filename: pool/main/p/picard-tools/picard-tools_2.7.1+dfsg-2_all.deb Size: 7612 SHA256: bbffc58db668d0f8d8a37cb31ceec68b2239cc216863d776be4e0191987a4bb6 SHA1: cbb02cd2464da0acb739e8093652f726e387eec1 MD5sum: 67d4a2e10c07efe22be37baf90eed3cb Description: Command line tools to manipulate SAM and BAM files SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Picard Tools includes these utilities to manipulate SAM and BAM files: AddCommentsToBam FifoBuffer AddOrReplaceReadGroups FilterSamReads BaitDesigner FilterVcf BamIndexStats FixMateInformation BamToBfq GatherBamFiles BedToIntervalList GatherVcfs BuildBamIndex GenotypeConcordance CalculateHsMetrics IlluminaBasecallsToFastq CalculateReadGroupChecksum IlluminaBasecallsToSam CheckIlluminaDirectory LiftOverIntervalList CheckTerminatorBlock LiftoverVcf CleanSam MakeSitesOnlyVcf CollectAlignmentSummaryMetrics MarkDuplicates CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar CollectGcBiasMetrics MarkIlluminaAdapters CollectHiSeqXPfFailMetrics MeanQualityByCycle CollectIlluminaBasecallingMetrics MergeBamAlignment CollectIlluminaLaneMetrics MergeSamFiles CollectInsertSizeMetrics MergeVcfs CollectJumpingLibraryMetrics NormalizeFasta CollectMultipleMetrics PositionBasedDownsampleSam CollectOxoGMetrics QualityScoreDistribution CollectQualityYieldMetrics RenameSampleInVcf CollectRawWgsMetrics ReorderSam CollectRnaSeqMetrics ReplaceSamHeader CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar CollectSequencingArtifactMetrics RevertSam CollectTargetedPcrMetrics SamFormatConverter CollectVariantCallingMetrics SamToFastq CollectWgsMetrics ScatterIntervalsByNs CompareMetrics SortSam CompareSAMs SortVcf ConvertSequencingArtifactToOxoG SplitSamByLibrary CreateSequenceDictionary SplitVcfs DownsampleSam UpdateVcfSequenceDictionary EstimateLibraryComplexity ValidateSamFile ExtractIlluminaBarcodes VcfFormatConverter ExtractSequences VcfToIntervalList FastqToSam ViewSam Package: python-nagiosplugin Source: nagiosplugin Version: 1.2.4-1~bpo9+1 Architecture: all Maintainer: Debian Python Modules Team Installed-Size: 154 Depends: python:any (<< 2.8), python:any (>= 2.7.5-5~) Homepage: https://projects.gocept.com/projects/nagiosplugin Priority: optional Section: python Filename: pool/main/n/nagiosplugin/python-nagiosplugin_1.2.4-1~bpo9+1_all.deb Size: 34288 SHA256: fc50799a857f6701c8ead02fca2ece4fc85a99a598d3a892ccd85f0e05fb3494 SHA1: 67f358c961b48cdadaf39a3daa2460b4919a52fb MD5sum: 0219570b0e96070044b398566721cead Description: Python class library for writing Nagios (Icinga) plugins (Python 2) nagiosplugin is a Python class library which helps writing Nagios (or Icinga) compatible plugins easily in Python. It cares for much of the boilerplate code and default logic commonly found in Nagios checks, including: . - Nagios 3 Plugin API compliant parameters and output formatting - Full Nagios range syntax support - Automatic threshold checking - Multiple independent measures - Custom status line to communicate the main point quickly - Long output and performance data - Timeout handling - Persistent "cookies" to retain state information between check runs - Resume log file processing at the point where the last run left - No dependencies beyond the Python standard library (except for Python 2.6). . This is the Python 2 version of the package. Package: python-ownet Source: owfs Version: 3.1p1-3~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 88 Depends: python:any (<< 2.8), python:any (>= 2.7.5-5~) Provides: python2.7-ownet Homepage: http://owfs.org/ Priority: extra Section: python Filename: pool/main/o/owfs/python-ownet_3.1p1-3~bpo8+1_all.deb Size: 15540 SHA256: 93f549e017de9a76c71e6a0f54e944c44710107989a5e977ce8423f47427a41e SHA1: e9d878e0b5671ce36cd4afb017ba82c1a0fffd57 MD5sum: 2a4e71063be67bb5fcf2bbad5a4fd9fa Description: Python module for accessing 1-wire networks The 1-Wire bus is a cheap low-speed bus for devices like weather sensors, access control, etc. It can be attached to your system via serial, USB, I2C, and other interfaces. . OWnet is a standalone Python module for accessing 1-wire sensors through an owserver. Package: python3-nagiosplugin Source: nagiosplugin Version: 1.2.4-1~bpo9+1 Architecture: all Maintainer: Debian Python Modules Team Installed-Size: 154 Depends: python3:any (>= 3.3.2-2~) Homepage: https://projects.gocept.com/projects/nagiosplugin Priority: optional Section: python Filename: pool/main/n/nagiosplugin/python3-nagiosplugin_1.2.4-1~bpo9+1_all.deb Size: 34372 SHA256: f4900d102df99d1e498b2fb3c20806910ee3d88d924d4c99cff10adf3a6c5b78 SHA1: c2a8a501f354866f6d83da369c7f234d10e537cc MD5sum: c1459cbfcf936130eb1b07776cc1a6ca Description: Python class library for writing Nagios (Icinga) plugins (Python 3) nagiosplugin is a Python class library which helps writing Nagios (or Icinga) compatible plugins easily in Python. It cares for much of the boilerplate code and default logic commonly found in Nagios checks, including: . - Nagios 3 Plugin API compliant parameters and output formatting - Full Nagios range syntax support - Automatic threshold checking - Multiple independent measures - Custom status line to communicate the main point quickly - Long output and performance data - Timeout handling - Persistent "cookies" to retain state information between check runs - Resume log file processing at the point where the last run left - No dependencies beyond the Python standard library (except for Python 2.6). . This is the Python 3 version of the package. Package: r-cran-matrixcalc Version: 1.0.3-2~bpo8+1 Architecture: all Maintainer: Debian Science Team Installed-Size: 230 Depends: r-base-core (>= 3.1.1-1+deb8u1) Homepage: https://cran.r-project.org/web/packages/matrixcalc Priority: optional Section: gnu-r Filename: pool/main/r/r-cran-matrixcalc/r-cran-matrixcalc_1.0.3-2~bpo8+1_all.deb Size: 159948 SHA256: 14850e380ae07c2c11b98ed529dfff1a95fdeb8f5ba377176c3ab2f5ebfd5566 SHA1: d5912c790bc31a9dc7a2b7ace0cce027b6aaa301 MD5sum: 00eb87a983d79b376b9d882ea8800d23 Description: GNU R functions for matrix calculations -- matrixcalc GNU R package supplying functions to support matrix calculations for probability, econometric and numerical analysis. There are additional functions that are comparable to APL functions which are useful for actuarial models such as pension mathematics. Package: r-cran-mi Version: 1.0-4~bpo8+1 Architecture: all Maintainer: Debian Science Team Installed-Size: 1904 Depends: r-base-core (>= 3.1.1-1+deb8u1) Homepage: https://cran.r-project.org/web/packages/mi Priority: optional Section: gnu-r Filename: pool/main/r/r-cran-mi/r-cran-mi_1.0-4~bpo8+1_all.deb Size: 1566518 SHA256: 68d28b0b82c6d1d90ac67d1fe8fd06c92c1ff037279bc2a62668373284c4d27b SHA1: 2c23d851efc25c06115eb9c180f7a7796046adb8 MD5sum: fc74c2a40537ec40c266f63cfbbe428c Description: GNU R package for Missing Data Imputation and Model Checking -- mi The mi R package provides functions for data manipulation, imputing missing values in an approximate Bayesian framework, diagnostics of the models used to generate the imputations, confidence-building mechanisms to validate some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty. Package: samtools-test Source: samtools Version: 1.3.1-3~bpo8+1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 9427 Recommends: libio-pty-perl Homepage: http://www.htslib.org/ Priority: optional Section: science Filename: pool/main/s/samtools/samtools-test_1.3.1-3~bpo8+1_all.deb Size: 1942184 SHA256: 53187c646f1e0a7f4b1b2addb2d284dd182f029d8545e05d92680a45dd2622b3 SHA1: 97d0d1b130b56ba6b6503a3c398e14ab8046f1ad MD5sum: 38b4167ddeef91ec8eb0265baa3164a7 Description: test files for the samtools package Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. . This package contains test files for the samtools package. Package: seabios Version: 1.9.3-2~bpo8+1 Architecture: all Maintainer: Debian QEMU Team Installed-Size: 677 Breaks: qemu-kvm (<< 0.14.0), qemu-system (<< 0.14.0) Multi-Arch: foreign Homepage: http://www.seabios.org Priority: extra Section: misc Filename: pool/main/s/seabios/seabios_1.9.3-2~bpo8+1_all.deb Size: 123914 SHA256: 9e5885b103bb1081a2efd28b6ed00d43e985a7f474b56e1e3ec11fe39da03d67 SHA1: 3a1af1f4d44b2f772d8f366fb93b5924fa74e2cd MD5sum: eb32c30211b44103bd9e05fd8adbffda Description: Legacy BIOS implementation SeaBIOS is a legacy BIOS implementation, aimed at supporting not only emulated hosts such as QEMU, but also real hardware. . Note, however, that SeaBIOS does not handle early initialization of core chipsets, so don't even think of flashing it to your board (look at Coreboot for that). Package: taktuk Version: 3.7.7-1~bpo8+1 Architecture: all Maintainer: Vincent Danjean Installed-Size: 262 Depends: perl:any, openssh-client | rsh-client Recommends: libterm-readline-gnu-perl Suggests: kanif, libtaktuk3 (>= 3.7.7-1~bpo8+1), libtaktuk-1-dev (>= 3.7.7-1~bpo8+1) Breaks: kanif (<< 1.2) Multi-Arch: foreign Homepage: http://taktuk.gforge.inria.fr/ Priority: optional Section: net Filename: pool/main/t/taktuk/taktuk_3.7.7-1~bpo8+1_all.deb Size: 73860 SHA256: 8d365b46987bdb5755ff63189eedd46579d4af65f2279b94e40745ab98b56a3a SHA1: 79195a6d1cf5e1de42488a7ad009fd70eb216c85 MD5sum: 41428d2c8f3782222243e26d25c4c072 Description: efficient, large scale, parallel remote execution of commands TakTuk allows one to execute commands in parallel on a potentially large set of remote nodes (using ssh to connect to each node). It is typically used inside high performance computing clusters and grids. It uses an adaptive algorithm to efficiently distribute the work and sets up an interconnection network to transport commands and perform I/Os multiplexing. It doesn't require any specific software on the nodes thanks to a self-propagation algorithm. Package: testng Version: 6.9.12-1~bpo8+1 Architecture: all Maintainer: Debian Java Maintainers Installed-Size: 909 Depends: libbsh-java (>= 2.0b4), libjcommander-java Recommends: ant, junit4, libyaml-snake-java Homepage: http://testng.org Priority: optional Section: java Filename: pool/main/t/testng/testng_6.9.12-1~bpo8+1_all.deb Size: 803242 SHA256: 23ccbd2d506f56ee3060063cf4505fcd7b7731a96478cac0688f892b654d3d4c SHA1: 56c7bf767c3b21f0dd9ff7887130bb466323effe MD5sum: 5bcaabf2b47a77c8e000bd27ccb7500f Description: testing framework for Java TestNG is a testing framework inspired from JUnit and NUnit but introducing some new functionalities that make it more powerful and easier to use, such as: * Annotations. * Run your tests in arbitrarily big thread pools with various policies available (all methods in their own thread, one thread per test class, etc.) * Test that your code is multithread safe. * Flexible test configuration. * Support for data-driven testing (with @DataProvider). * Support for parameters. * Powerful execution model (no more TestSuite). * Supported by a variety of tools and plug-ins (Eclipse, IDEA, Maven, etc.) * Embeds BeanShell for further flexibility. * Default JDK functions for runtime and logging (no dependencies). * Dependent methods for application server testing. TestNG is designed to cover all categories of tests: unit, functional, end-to-end, integration, etc. Package: ucf Version: 3.0031+nmu2~bpo8+1 Architecture: all Maintainer: Manoj Srivastava Installed-Size: 231 Depends: debconf (>= 1.5.19), coreutils (>= 5.91) Provides: ucf-divert Multi-Arch: foreign Priority: standard Section: utils Filename: pool/main/u/ucf/ucf_3.0031+nmu2~bpo8+1_all.deb Size: 70772 SHA256: 6aa61c4ae3acfa1a4f0364b9add30534d0c1fbd99ea5ef336142276bc05c7c9d SHA1: 91cb24febd6d6026dc64c5d406d236213584a57e MD5sum: fb0f37489ca68cbf917de9c211c3c522 Description: Update Configuration File(s): preserve user changes to config files Debian policy mandates that user changes to configuration files must be preserved during package upgrades. The easy way to achieve this behavior is to make the configuration file a 'conffile', in which case dpkg handles the file specially during upgrades, prompting the user as needed. . This is appropriate only if it is possible to distribute a default version that will work for most installations, although some system administrators may choose to modify it. This implies that the default version will be part of the package distribution, and must not be modified by the maintainer scripts during installation (or at any other time). . This script attempts to provide conffile-like handling for files that may not be labelled conffiles, and are not shipped in a Debian package, but handled by the postinst instead. This script allows one to maintain files in /etc, preserving user changes and in general offering the same facilities while upgrading that dpkg normally provides for 'conffiles'. . Additionally, this script provides facilities for transitioning a file that had not been provided with conffile-like protection to come under this schema, and attempts to minimize questions asked at installation time. Indeed, the transitioning facility is better than the one offered by dpkg while transitioning a file from a non-conffile to conffile status. Package: vdanjean-archive-keyring Version: 2018.03.17 Architecture: all Maintainer: Vincent Danjean Installed-Size: 48 Conflicts: vdanjean-keyring Replaces: vdanjean-keyring (<< 2015) Provides: vdanjean-keyring Priority: optional Section: misc Filename: pool/main/v/vdanjean-archive-keyring/vdanjean-archive-keyring_2018.03.17_all.deb Size: 28440 SHA256: a645127714b3f4bb229f12a05ff11fa77f3814b009e9f544192596e83ee6384b SHA1: 06acf7edf1f5f3f815d1be9e6e03b655e8ebf421 MD5sum: bfdb6ff6bb81dfb4dc5462f4410fc5c2 Description: GnuPG archive keys of vdanjean's Debian repositories Vincent Danjean provides some personal packages in a Debian repository. Their Release files are digitally signed. This package contains the archive keys used for that. Package: vdanjean-backuppc Source: vdanjean-backuppc-client Version: 2.0.3 Architecture: all Maintainer: Vincent Danjean Installed-Size: 35 Depends: adduser, sudo (>= 1.7.2p1-1), rsync, openssh-server | ssh-server Priority: extra Section: utils Filename: pool/main/v/vdanjean-backuppc-client/vdanjean-backuppc_2.0.3_all.deb Size: 5860 SHA256: d9481338044477b767c5674a9f1f1203e9e2605f34b774cd2e287b803cb8597a SHA1: 643b5a256ea073e287041092b11d7f74bdb311a0 MD5sum: 4586e6f1131bcebf1fc5653dbe2767b4 Description: setup ssh keys to allow access from vdanjean backuppc server THIS PACKAGE GIVE ME ROOT ACCESS ON YOUR MACHINE . This package is for Vincent Danjean private use. You can be interested by the source but probably not by the binary. . This package allows Vincent Danjean backuppc server to access the computer to save and restore files. Package: vdanjean-logcheck-rules Source: vdanjean-debian-utils Version: 1.29 Architecture: all Maintainer: Vincent Danjean Installed-Size: 93 Depends: logcheck, logcheck-database Breaks: vdanjean-systemd-logcheck-rules Replaces: vdanjean-systemd-logcheck-rules Priority: extra Section: utils Filename: pool/main/v/vdanjean-debian-utils/vdanjean-logcheck-rules_1.29_all.deb Size: 13004 SHA256: 8e959747ad0c88721fb8fc6a207ce52ce0b7a971751f795348c8d066fc5942de SHA1: b23ecfe12d68302bf0fd4a0028e152ccda548c60 MD5sum: fbd1a66d449f589c0dd1b7819df1ee10 Description: install logcheck rules for systemd (and other) This package is intended for my private use. . It installs logcheck rules for systemd, gathered from https://wiki.debian.org/systemd/logcheck but also other rules more specific to my installation. Feel free to reuse it, but check the installed rules. Package: vdanjean-munin-node Source: vdanjean-debian-utils Version: 1.29 Architecture: all Maintainer: Vincent Danjean Installed-Size: 22 Depends: adduser, munin-node Priority: extra Section: utils Filename: pool/main/v/vdanjean-debian-utils/vdanjean-munin-node_1.29_all.deb Size: 4550 SHA256: a21880d33d3eb1696dd80a08fbbcdaab0841fb4a0a571b3474b37c019c95d9ef SHA1: c64c2a10c2729eb4bbd97f5a2cf6eb5433219462 MD5sum: c010f1187b9c883fb57a8354ff9a815b Description: setup ssh keys to allow access for munin THIS PACKAGE GIVE ME ACCESS ON YOUR MACHINE . This package is for private use by myself. You can be interested by the source but probably not by this binary. . This package allows munin master for my installation to access the computer to get munin-node information.